Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0709 ATGAGTTTCTGTTCTGATCACACCAAGGGTGCTTCCAATGAACATGTTTCCTCTGCAGTTGGAAATGACTCTTCTGAGAACAAAAGGCTCAAATTCAAGGCCCTTTTGAGAAAAACCATGTGGAACTTTGCCTTGGCGTGTGTTGGTGTTGATCCTTGTGGTGGCAGCAACGACCATAATGGTCAAAGGAAGACAACTTCGGAGCATAACAAGGCGTGGTTGCTGGCGGAGTCTGGAGCAGAATTGGCTACTGCTGACCCTCAATCGGTTCACTCATCTTTCAGGTTCAGTTTCTGCTCTCAGGTTGAGGTTGAGTCCTTCAACATGAGCTCTTCTGCTTCTGCTGCTGCCGCTGCAACCTTTTTGATGGTAAATTTGGAATGTGAATCTCAAGTTAAGGAGATGAAATGGAGAATACATTCGCTGGAGAAAAGCATGTCTCCAGTCTTCAACCCTTTGATCAGGTTCAGCTATGATGAAATTCTATCAGCCACTCGCAATTTCTCCAAAGGGAGAGTGTTGGGGAGAGGTGCCTTGAGCTGTGTTTATAGAGGAAGAGTTGGGTTTTGGAGAACTGCTGTTGCTATTAAAAGGTTGGACAAGGAAGACAAAGAGTGTGCTAAGGCGTTTTGTAGAGAATTGATGATTGCTAGTTCTCTTCATAACACAAATGTTGTTCCTCTTGTGGGATTTTGTATTGACTCAGAAGAGGGTTTGTTTTTGGTATACAAGTATGTGTCTGGGGGAAGCTTAGAGCATCACTTGCATGGGAAGAAGAAAAGTTTGAAGGGTAGTTCTCCACTTCCATGGTCCGTGAGATATCAAGTTGCAATTGGGATTGCAGAAGCCGTGGCTTATCTGCATAATGGAACAGAAAGATGTGTTGTTCATAGAGACATTAAGCCTTCAAACATTCTTCTCTCCTCTAAGAAGATTCCCAAGTTATGTGATTTTGGATTAGCTTCATGGACTCCAGCCCCATCAGTTCCTTTTCTTTGCAAAACAGTGAAAGGAACATTTGGTTATTTGGCACCTGAGTATTTCCAACATGGGAAAGTATCAGATAAGACCGATGTTTATGCTTTGGGAGTTGTTTTATTGGAACTCTTAACTGGCCGCAAGCCAATTGAAGCAAAAAGACCCCCTGGAGAGGAAAACTTGGTGATCTGGGCTAAACCTTTGCTCAGGAAAGGGAAAGGAGCGATTCAAGAGTTGCTTGATCCTCAAGTCAAGTACAACTCGAGTTACACAGATCAAATGGCTCGGATGGTGGATGCAGCAGCTGCCTGTGTTACAAATGAAGAATCTAGGAGGCCAAGCATAGGTGAGATTGTTGCAATACTGAAAGGTGAAGTTGAACCTGTGCTCTCTAGAAGAAGGAAGTCTGGTTATCTTGGTAATGGGTTTGTGATTGATTATTACCCTCAGTTACAACAAACAAACAATGAGATGAAAAGTCACTTGGCCTTGGCAATGCTAGGAGTTCCAGAGTGTGAGGATGATGATTTTCTCTACGGTCGTTGA 1524 0.4344 MSFCSDHTKGASNEHVSSAVGNDSSENKRLKFKALLRKTMWNFALACVGVDPCGGSNDHNGQRKTTSEHNKAWLLAESGAELATADPQSVHSSFRFSFCSQVEVESFNMSSSASAAAAATFLMVNLECESQVKEMKWRIHSLEKSMSPVFNPLIRFSYDEILSATRNFSKGRVLGRGALSCVYRGRVGFWRTAVAIKRLDKEDKECAKAFCRELMIASSLHNTNVVPLVGFCIDSEEGLFLVYKYVSGGSLEHHLHGKKKSLKGSSPLPWSVRYQVAIGIAEAVAYLHNGTERCVVHRDIKPSNILLSSKKIPKLCDFGLASWTPAPSVPFLCKTVKGTFGYLAPEYFQHGKVSDKTDVYALGVVLLELLTGRKPIEAKRPPGEENLVIWAKPLLRKGKGAIQELLDPQVKYNSSYTDQMARMVDAAAACVTNEESRRPSIGEIVAILKGEVEPVLSRRRKSGYLGNGFVIDYYPQLQQTNNEMKSHLALAMLGVPECEDDDFLYGR* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0709 507 Pfam Protein kinase domain 169 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0709 507 PANTHER OS01G0750732 PROTEIN 13 505 - -
Vra6g0709 507 PANTHER SERINE/THREONINE-PROTEIN KINASE CDL1 13 505 - -
Vra6g0709 507 ProSitePatterns Serine/Threonine protein kinases active-site signature. 295 307 IPR008271 GO:0004672|GO:0006468
Vra6g0709 507 MobiDBLite consensus disorder prediction 1 23 - -
Vra6g0709 507 SMART serkin_6 168 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0709 507 ProSiteProfiles Protein kinase domain profile. 168 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0709 507 SUPERFAMILY Protein kinase-like (PK-like) 147 449 IPR011009 -
Vra6g0709 507 Gene3D Phosphorylase Kinase; domain 1 153 245 - -
Vra6g0709 507 Gene3D Transferase(Phosphotransferase) domain 1 246 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0709 Vra-Chr6 6704345 6707110 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0709 156 451 Trihelix Transcription Factor Family AT1G70460 41.946 7.15e-70 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vra6g0709 Pkinase 2.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0709 - - gmx:100802176 846.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0948 3 9509078 9512442 Vra6g0709 6 6704345 6707110 PCT