Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0707 ATGGCACTCTCTTTGACATCTCATGGGGTCAGTGAGTACCAAAAATGTGGGGTTGAAGAGGAAGATGGTTCACAAAGTACTAATGGTTTCAGCAATGATTCAGCTTCAGCCATAACTCAATCTCTGATTAACTTCAAAGCCGACGAGTTCAGCAGCCTCATGCAAGGTAGTGAGTCTTTTCTTAGCTTTCAGCAGAGCTGGATGTTTTCCAAAGAGAGTAATTTGCATGAAGGTTGCAACCAATGGAACCATGTTAGTCCCAAAAACAACACTACAGACATGCGCCTAGTCCAAAACTTCAGCTGCTCTGAAACTGCTACTTGCTATAGCTCCATAATCACTGGTGCAAAAGATAAGAAACAATGTGAAAGTTCATCTTCTGGGTGGCTATACTCAGAACCAAATGTCCATAGTTCTAGCCTGAATGAGTCAGCAGCACAAGAATCGGTCTTGAGAAAGCGATCTTTTATGGGAGAGACCATGCAAGCTGCCAATAACGCCAAGAAGCCTTGCACAACTGCAAGTAAAGCAACAAAACCAAAGACAAGCCCTTCTAAGGATCCTCAAAGTGTCGCTGCCAAGAATAGAAGAGAGAGAATAAGTGAGCGGCTTAAGATACTCCAAGAACTGGTCCCCAACGGCTCCAAGGTTGATTTGGTTACCATGTTGGAGAAAGCAATTAGTTATGTAAAGTTTCTTCAGCTGCAAGTGAAGGTGTTGGCAGCTGATGAATTTTGGCCTGTCCAAGGTGGAAAAGCTCCTGACATTTCTCAAGTAAGACAAGCCATCGATTCCATTCTTTCATCTCAAAGATGA 816 0.4326 MALSLTSHGVSEYQKCGVEEEDGSQSTNGFSNDSASAITQSLINFKADEFSSLMQGSESFLSFQQSWMFSKESNLHEGCNQWNHVSPKNNTTDMRLVQNFSCSETATCYSSIITGAKDKKQCESSSSGWLYSEPNVHSSSLNESAAQESVLRKRSFMGETMQAANNAKKPCTTASKATKPKTSPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLAADEFWPVQGGKAPDISQVRQAIDSILSSQR* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0707 271 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 24 264 - -
Vra6g0707 271 CDD bHLH_AtIND_like 185 247 - -
Vra6g0707 271 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 184 243 IPR036638 GO:0046983
Vra6g0707 271 MobiDBLite consensus disorder prediction 163 197 - -
Vra6g0707 271 Pfam Helix-loop-helix DNA-binding domain 194 234 IPR011598 GO:0046983
Vra6g0707 271 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 184 233 IPR011598 GO:0046983
Vra6g0707 271 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 24 264 - -
Vra6g0707 271 MobiDBLite consensus disorder prediction 163 190 - -
Vra6g0707 271 Gene3D - 178 241 IPR036638 GO:0046983
Vra6g0707 271 SMART finulus 190 239 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0707 Vra-Chr6 6676227 6677818 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0707 72 269 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 51.942 5.99e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra6g0707 HLH 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0707 - - vra:106764568 507.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0950 3 9531150 9533035 Vra6g0707 6 6676227 6677818 PCT