Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0706 ATGGAGGAGGCTCCTCCGGCGGAGGCGGTGGCCGTACGGCGAGCGTTGGAGCTGCTGCGGCTAAACGACCCCGTTCTGAGGGTCCAAGCGGCCAAGGACATCCGCCGCCTCACTAAAACCTCCCACCGCTGCCGCCGCCAACTCCGTCAGGCCGTCACCCCACTCGTCTCCATGCTCCGAGTCGACTCGCCCGAGTTCCATGAACCCGCCCTTCTCGCTCTCCTCAACCTCGCCGTACAAGACGAAAAGAACAAAATTAGCATTGTGGAAGCTGGTGCATTAGAGCCGATAATCAGTTTCCTCAAGTCAGAAAATCCAAATCTGCGGGAGTATGCAACTGCATCTTTGCTCACTCTATCTGTCTCTCCAACCAACAAACCAATCATCAGTTCTTGTGGCGCGATTCCTCTGCTTGTAAATACTCTTAAAGATGGAAGCTTTCAAGCTAAAGTTGATGCTGTGACGGCTCTGTCTAATTTATCAACACACCCTGAAAACCTGAGCATCATTCTCGAAACAAATGCAATGCCTTTTATAGTCAATCTTCTCAACACCTGTAGAAAATCTTCAAAAATAGCTGAAAAATGTTGTGCTCTGATTGAATCCTTGGTGGGTTATGAGGAGGGTAGAACTGCCTTAACATCTGAAGAAGGTGGGGTTCTTGCAGTCGTGGAAGTTCTTGAAAACGGAACGCCCCAGAGTAGGGAACATGCAGTTGGAGCACTGCTGAGAATGTGTGAAAGTGAAAGATGTAAATACAGGGAACCGATTCTCAGAGAAGGTGTTATTCCGGGACTTCTTGAGCTGACAGTTCAAGGAACCTCTAAATCACAGCCAAAAGCACGTACCCTTTTGCAGTTACTGAGAGAGTCTCCATATTCAAGACCTGAAGTCGAACCGGACACTCTTGAGAACATAGTTTGTGACATCATATCACAGATTGATGGAGATGATGAATCTGGTAAAGCGAAGAAGATGCTGGCTGAGATGGTCCAAGTAAGCATGGAGCAGAGTTTGAGACATTTGCAGCAAAGGGCTCTTGTATGTACTCCTTCTGATATGCCTATCACAAGTTGTGCTTCTGAAGTTTCTTCAAAATAG 1101 0.4777 MEEAPPAEAVAVRRALELLRLNDPVLRVQAAKDIRRLTKTSHRCRRQLRQAVTPLVSMLRVDSPEFHEPALLALLNLAVQDEKNKISIVEAGALEPIISFLKSENPNLREYATASLLTLSVSPTNKPIISSCGAIPLLVNTLKDGSFQAKVDAVTALSNLSTHPENLSIILETNAMPFIVNLLNTCRKSSKIAEKCCALIESLVGYEEGRTALTSEEGGVLAVVEVLENGTPQSREHAVGALLRMCESERCKYREPILREGVIPGLLELTVQGTSKSQPKARTLLQLLRESPYSRPEVEPDTLENIVCDIISQIDGDDESGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDMPITSCASEVSSK* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0706 366 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 133 175 IPR000225 GO:0005515
Vra6g0706 366 Pfam Armadillo/beta-catenin-like repeat 82 117 IPR000225 GO:0005515
Vra6g0706 366 Pfam Armadillo/beta-catenin-like repeat 125 161 IPR000225 GO:0005515
Vra6g0706 366 PANTHER U BOX DOMAIN-CONTAINING 6 349 - -
Vra6g0706 366 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 6 349 - -
Vra6g0706 366 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 174 218 IPR000225 GO:0005515
Vra6g0706 366 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 92 134 IPR000225 GO:0005515
Vra6g0706 366 SMART arm_5 40 79 IPR000225 GO:0005515
Vra6g0706 366 SMART arm_5 122 162 IPR000225 GO:0005515
Vra6g0706 366 SMART arm_5 81 121 IPR000225 GO:0005515
Vra6g0706 366 SMART arm_5 206 247 IPR000225 GO:0005515
Vra6g0706 366 SMART arm_5 163 205 IPR000225 GO:0005515
Vra6g0706 366 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 50 92 IPR000225 GO:0005515
Vra6g0706 366 SUPERFAMILY ARM repeat 14 298 IPR016024 -
Vra6g0706 366 Gene3D - 7 346 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0706 Vra-Chr6 6663431 6666832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0706 12 289 U-box Gene Family AT2G23140 33.929 3.11e-38 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0706 - - gmx:100793971 616.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0951 3 9548599 9552516 Vra6g0706 6 6663431 6666832 PCT