Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0705 ATGACCACCAAAGCTGAAGGCACTCCAGAAGAAGATACAATGTCAAGTATGGAAGAGGGTTTTTCCTCTACCCCTTCCACAACCTTTGGATTTCATCACTGTTGTTCAAACCGTGTTGCAACCCTGGCACAGAAGGTCATAGCAGAAGTGATTGGCACATATTTTGTGGTATTTGCTGGTTGTGGAGCTGTGGCAGTGAATAAGATCTATGGCTCAGTCACATTTCCAGGCATTTGTGTGACATGGGGACTCATCGTAATGGTCATGATTTACACTGTTGGTCATATCTCTGGAGCACACTTCAACCCTGCAGTCACCATCACTTTAGCCATTTTTCGCCGCTTCTCATATAAACAGGTGCCACTCTACATTTTTGCTCAGTTACTGGGGTCTATACTTGCAAGTGGCACTCTAGCCCTAATGTTGGATGTAACACCTAAATCTTTCTTTGGAACGATACCAGTTGGATCCAATGTTCAATCTTTAGCTGCTGAAATCATCATCACCTTTCTCTTGATGTTTGTTATATCTGCTGTTACTACAGACGACAGAGCGGTGGGTGATTTTGCAGGAGTTGTTGTTGGGATGACTATAATGTTGAATGTCTTCGTTGCCGGGCCTGTGTCAGGAGCTTCCATGAACCCTGCAAGAAGTATTGGTCCTTCGCTTATGATACATGTTTACAAAGGGTTGTGGATATATATCGTTGGTCCAATTATTGGAGCCATAGCTGGAGCACTTGCTTATAACTTTCTTAGATCCACCACACACAATTCACCTTCAGAAGAAATCACAGGACTTTCTTCAGGTTGA 813 0.4342 MTTKAEGTPEEDTMSSMEEGFSSTPSTTFGFHHCCSNRVATLAQKVIAEVIGTYFVVFAGCGAVAVNKIYGSVTFPGICVTWGLIVMVMIYTVGHISGAHFNPAVTITLAIFRRFSYKQVPLYIFAQLLGSILASGTLALMLDVTPKSFFGTIPVGSNVQSLAAEIIITFLLMFVISAVTTDDRAVGDFAGVVVGMTIMLNVFVAGPVSGASMNPARSIGPSLMIHVYKGLWIYIVGPIIGAIAGALAYNFLRSTTHNSPSEEITGLSSG* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0705 270 MobiDBLite consensus disorder prediction 1 24 - -
Vra6g0705 270 PRINTS Major intrinsic protein family signature 44 63 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra6g0705 270 PRINTS Major intrinsic protein family signature 82 106 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra6g0705 270 PRINTS Major intrinsic protein family signature 119 138 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra6g0705 270 PRINTS Major intrinsic protein family signature 164 182 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra6g0705 270 PRINTS Major intrinsic protein family signature 195 217 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra6g0705 270 PRINTS Major intrinsic protein family signature 232 252 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra6g0705 270 Gene3D Glycerol uptake facilitator protein. 9 264 IPR023271 -
Vra6g0705 270 SUPERFAMILY Aquaporin-like 40 260 IPR023271 -
Vra6g0705 270 PANTHER AQUAPORIN NIP2-1 12 257 IPR034294 -
Vra6g0705 270 CDD MIP 44 252 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra6g0705 270 ProSitePatterns MIP family signature. 100 108 IPR022357 -
Vra6g0705 270 PANTHER AQUAPORIN NIP4-1-RELATED 12 257 - -
Vra6g0705 270 Pfam Major intrinsic protein 41 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra6g0705 270 TIGRFAM MIP: MIP family channel proteins 48 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0705 Vra-Chr6 6658069 6659566 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0705 1 269 Major Intrinsic Protein MIP AT5G37820 60.370 7.27e-113 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0705 K09874 - gmx:100791338 397.897