Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0701 ATGCATGCCCTTAACCTATCATATCACCAAAACATAAAAATTCAAACAAAACTAAGTTATATTAACCATTCATCACCACCACCAACAACACAGCAAAACCACCAGTCTAAGTCCACACTCTTCATCCTCTCTCCTTTACAAATATATATCCATCTACCCTCTCTTCTGCCATTTGTCAGAGCTTCCATCCCTTCTTTTTCTCTCTCTCATCACAACCTCAAGGACTTCACAAAGAAACAAACTATGCGAAAACCTTGCTGTGACAAAGAAAACATCAATAAAGGAGCATGGTCTAAGCAAGAAGATCAAAAGCTCATTGATTACATCAGAGTTCATGGTGAAGGTTGTTGGCGTTCCATTCCCAAAGCTGCTGGGTTGCATCGTTGTGGCAAAAGCTGCAGGCTCAGATGGTTAAACTATTTGCGACCAGATATCAAACGTGGAATCTTTGCTGAAGATGAAGAAGACCTTATCATCAAACTCCATGCCCTCCTTGGTAACAGGTGGTCACTCATTGCTGGAAGATTGCCCGGAAGAACAGACAATGAGGTGAAGAACTATTGGAATTCTCACATCCGAAGAAAACTGATAAAGATGGGAATTGATCCAAATAACCATAAGCCACACCAAAGTTTTTCTCGTCCTCATGCTTCTTCTGCCGAGGCTGCATCAACATCCGAGTCCATGAATAATAAAGTTCCTGTCTTCAAATCTCCACTTGCTGCCACTCATCATAGGATTTCCTTCACAGAACAAGAATCAGCAATAATTTCGTCACCCTCTTTGAATCTTGACCTAACAATTGCTTTACCTTCTTCTTTGATTGGTGCTTTGGAAGACAAGCCAGTACAAAATTCCGAGTCCACCAATACACTGGACATGGAAATAGATCTCAACTGTTAG 903 0.4109 MHALNLSYHQNIKIQTKLSYINHSSPPPTTQQNHQSKSTLFILSPLQIYIHLPSLLPFVRASIPSFSLSHHNLKDFTKKQTMRKPCCDKENINKGAWSKQEDQKLIDYIRVHGEGCWRSIPKAAGLHRCGKSCRLRWLNYLRPDIKRGIFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLIKMGIDPNNHKPHQSFSRPHASSAEAASTSESMNNKVPVFKSPLAATHHRISFTEQESAIISSPSLNLDLTIALPSSLIGALEDKPVQNSESTNTLDMEIDLNC* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0701 300 Pfam Myb-like DNA-binding domain 94 141 IPR001005 -
Vra6g0701 300 Pfam Myb-like DNA-binding domain 149 191 IPR001005 -
Vra6g0701 300 Gene3D - 149 225 - -
Vra6g0701 300 CDD SANT 96 141 IPR001005 -
Vra6g0701 300 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 83 291 - -
Vra6g0701 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 146 196 IPR017930 -
Vra6g0701 300 SMART sant 93 143 IPR001005 -
Vra6g0701 300 SMART sant 146 194 IPR001005 -
Vra6g0701 300 SUPERFAMILY Homeodomain-like 91 188 IPR009057 -
Vra6g0701 300 ProSiteProfiles Myb-like domain profile. 142 192 IPR001005 -
Vra6g0701 300 MobiDBLite consensus disorder prediction 203 229 - -
Vra6g0701 300 MobiDBLite consensus disorder prediction 206 229 - -
Vra6g0701 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 89 145 IPR017930 -
Vra6g0701 300 Gene3D - 94 146 - -
Vra6g0701 300 PANTHER MYB TRANSCRIPTION FACTOR 83 291 - -
Vra6g0701 300 ProSiteProfiles Myb-like domain profile. 89 141 IPR001005 -
Vra6g0701 300 CDD SANT 152 192 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0701 Vra-Chr6 6616440 6618056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0701 83 274 MYB Transcription Factor Family AT4G38620 54.808 2.58e-77 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra6g0701 Myb_DNA-binding 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0701 K09422 - gmx:100793444 389.423