Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0697 ATGGGGTGCTGCTTCAGTGCCCAGATCAAAGCTGAGAGCCCTCCACGCAACGGTTTGAGCTCAAAGGATGGTAACACAGAAGAGGATGGCTTAAGCAGCAAGATCTCCACTCCCTCCGTACCTCCAACACCAAGGACAGAGGGTGAGATCTTGAAGTCCTCAAATATGAAAAGCTTCACCTTTGTTGAGCTAAAAACTGCTACAAGGAACTTTCGTCCAGATAGTGTGGTGGGTGAAGGTGGGTTTGGTCGTGTTTTTAAGGGGTGGATTGATGAGCAATCACTTGCACCAGTTAGACCAGGGACTGGATTGGTCATTGCTGTGAAGATGCTTAACCAAGAAGGTCTGCAGGGACACAGTGAATGGTTGACAGAAATCAACTACCTGGGGCAGCTGCATCATCCTAATCTTGTGAAACTGATTGGTTACTGCTTAGAGGATCACCAAAGGCTTTTGGTGTATGAGTTTTTGACCAAGGGAAGTTTGGATAATCATTTATTTAGGAGAGGTTCTTACTTTCAACCACTTTCTTGGAACATCCGAATGAAGGTTGCTCTTGATGCTGCCAAGGGTCTTGCATATCTTCACAGCGATGAAGCAAAAGTGATATATCGAGACTTCAAAGCTTCAAATATCTTACTTGATTCGAATTACAATGCAAAACTTTCTGATTTTGGCTTGGCAAAGGATGGACCAGCAGGTGATAAGAGCCATGTCTCCACAAGGGTAATGGGCACTTATGGCTATGCTGCTCCTGAATATATTGCCACAGGTCACTTGACAAAGAAGAGTGATGTATACAGTTTTGGGGTTGTTCTGCTTGAAATCATGTCTGGCAAACGTGCCCTTGACAGCAACAGGCCAAGTGGGGAGCACAACTTAATTGAATGGGCCAAACCATACCTCAGCAACAAACGCAGGATCTTCCAAGTCATGGATGCTCGCATTGAAGGCCAATACTCGACGCGCGAAGCCATGAAAGTAGCCAACCTTGCCATTCAATGCCTATCTGTGGAGCCAAGATTTAGACCAAAAATGGATGAAGTGGTGAGAGCATTGGAAGAACTTCAGGATTCTGGTGAGAAAACTGTTGCAGGGGTGGGAAGCCATCGTCATCATCAAACTGGGAGGATTGACCATAGCTCAAGAAGCAGTGGCTACAGACAACATAGAGGTAAACAACATGAAACAACAAAGAAGTGA 1203 0.4539 MGCCFSAQIKAESPPRNGLSSKDGNTEEDGLSSKISTPSVPPTPRTEGEILKSSNMKSFTFVELKTATRNFRPDSVVGEGGFGRVFKGWIDEQSLAPVRPGTGLVIAVKMLNQEGLQGHSEWLTEINYLGQLHHPNLVKLIGYCLEDHQRLLVYEFLTKGSLDNHLFRRGSYFQPLSWNIRMKVALDAAKGLAYLHSDEAKVIYRDFKASNILLDSNYNAKLSDFGLAKDGPAGDKSHVSTRVMGTYGYAAPEYIATGHLTKKSDVYSFGVVLLEIMSGKRALDSNRPSGEHNLIEWAKPYLSNKRRIFQVMDARIEGQYSTREAMKVANLAIQCLSVEPRFRPKMDEVVRALEELQDSGEKTVAGVGSHRHHQTGRIDHSSRSSGYRQHRGKQHETTKK* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0697 400 SUPERFAMILY Protein kinase-like (PK-like) 44 353 IPR011009 -
Vra6g0697 400 ProSiteProfiles Protein kinase domain profile. 71 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0697 400 CDD STKc_IRAK 77 356 - -
Vra6g0697 400 MobiDBLite consensus disorder prediction 365 400 - -
Vra6g0697 400 Gene3D Transferase(Phosphotransferase) domain 1 157 375 - -
Vra6g0697 400 Pfam Protein tyrosine and serine/threonine kinase 75 353 IPR001245 GO:0004672|GO:0006468
Vra6g0697 400 PANTHER KINASE 1B 22 397 - -
Vra6g0697 400 MobiDBLite consensus disorder prediction 1 51 - -
Vra6g0697 400 PIRSF TyrPK_CSF1-R 173 282 - -
Vra6g0697 400 PIRSF TyrPK_CSF1-R 319 400 - -
Vra6g0697 400 PIRSF TyrPK_CSF1-R 71 183 - -
Vra6g0697 400 Gene3D Phosphorylase Kinase; domain 1 46 156 - -
Vra6g0697 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Vra6g0697 400 PANTHER OS01G0588500 PROTEIN-RELATED 22 397 - -
Vra6g0697 400 MobiDBLite consensus disorder prediction 13 51 - -
Vra6g0697 400 MobiDBLite consensus disorder prediction 360 400 - -
Vra6g0697 400 ProSitePatterns Protein kinases ATP-binding region signature. 77 109 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0697 Vra-Chr6 6580215 6583259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0697 1 353 Glycoside Hydrolase AT3G07070 46.978 4.78e-109 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vra6g0697 PK_Tyr_Ser-Thr 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0697 - - gmx:100775335 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0697 6 6580215 6583259 Vra6g0697 6 6580215 6583259 ECH
Vra3g0958 3 9605696 9608807 Vra6g0697 6 6580215 6583259 PCT