Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0692 ATGCGGCGGAACAGTCCTGCATACTACAGTCCTCCGCGGCGAGGATACGGTGGCCGTGGAGGAGGGTCCAATAGAAGGGGATTCGGTGGAGGCAGGCGCAGGGACAACAACAATGGAAGCCTCTTGGTTCGGAACATTCCTCTCGATTGCAGACCTGAGGAGCTTCGTGTTCCTTTCGAGCGATTCGGACCTGTTCGCGATGTTTACATACCCAAAGATTATTACTCTGGAGAACCTCGAGGCTTTGCATTTGTGCAGTTTGTGGATCCTTATGACGCCTCAGAGGCACAGTACCATATGAACAGACAGATCTTTGCTGGAAGGGAAATATCTGTTGTTGTTGCTGAAGAGACAAGAAAAAGACCAGAGGAGATGCGACACAGGACCAGAGCCAGAGGACCGGCAGGCTATGGAGGCAGAAGGTCTTCTCATTATGGGCGTTCTCGATCTCGCTCTATTACTAGATCACGCTCACCACCTTATCATTCTGGTTCTAGAAGTCGGTATCGTTCAAGGTCCTATTCTCCTGCTCCAAGACGGCAAAGTGATTACTCTGTTTCCCCTAGGAGGCAAGCAGAGCATCGTAGATCACCAAGAGGTCCTCCCAGGGAGCGAGATGGTGAACTAAAGCGTAGATCTTATTCTCCTGCATATGGCAATGGTATTGAACAGAATCAAAGCAATGGATATGCTGAGAAATCTATGTACAAGTCTGAAGCTGATCGAGGCCAGTGGAAGTCATCGAGATCACCCCTTGGGTCTAGATCAAGATCTGCTGACCTGTCACCAAGGCGTGGAAGATGA 804 0.5 MRRNSPAYYSPPRRGYGGRGGGSNRRGFGGGRRRDNNNGSLLVRNIPLDCRPEELRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHMNRQIFAGREISVVVAEETRKRPEEMRHRTRARGPAGYGGRRSSHYGRSRSRSITRSRSPPYHSGSRSRYRSRSYSPAPRRQSDYSVSPRRQAEHRRSPRGPPRERDGELKRRSYSPAYGNGIEQNQSNGYAEKSMYKSEADRGQWKSSRSPLGSRSRSADLSPRRGR* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0692 267 MobiDBLite consensus disorder prediction 152 185 - -
Vra6g0692 267 SUPERFAMILY RNA-binding domain, RBD 35 146 IPR035979 GO:0003676
Vra6g0692 267 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 117 IPR000504 GO:0003723
Vra6g0692 267 SMART rrm1_1 40 113 IPR000504 GO:0003723
Vra6g0692 267 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 23 265 - -
Vra6g0692 267 MobiDBLite consensus disorder prediction 1 42 - -
Vra6g0692 267 MobiDBLite consensus disorder prediction 118 267 - -
Vra6g0692 267 Gene3D - 30 174 IPR012677 -
Vra6g0692 267 MobiDBLite consensus disorder prediction 186 212 - -
Vra6g0692 267 MobiDBLite consensus disorder prediction 218 233 - -
Vra6g0692 267 PANTHER OS02G0252100 PROTEIN 23 265 - -
Vra6g0692 267 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 110 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0692 Vra-Chr6 6540925 6544300 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0692 7 101 Eukaryotic Initiation Factors Gene Family AT3G11400 36.842 5.67e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0692 K12900 - gmx:100804294 392.504