Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0690 ATGGCATTTGGGTTCATGGAGGTGGAGCTGGTGAAAGCAAAGGGTCTTCATGATACTGATGTCTTTGCTCGTATGGATCCTTATGTCCTGTTACAATACAAAGGTCAAGAGCGAAAGAGCAGTGTAATTCATGAGGGAGGCAGAAATCCTGTATGGAATGAGAAATTCGTATTCAAAGTAGAATATCCCGGTTCAGGTGACCAATACAAGCTCAACCTTTTAATCATGGACAAGGATGTATTTTCTGCAGATGACTTTGTTGGCCAGGCTGCAGTTTATGTAAAGGATTTATTGGCAGAAGGAACAGAGAAGGGATCGGCTGAGCTTCGTCCTCACAAGTATAGTGTGGTTCGTGCTGACCAATCTTATTGTGGTGAAATAGAAGTTGGTATAACTTTCACCTTAAAGGAACAGGAATATGCTGAAGATGATGATGTTGGAGGATGGAAGCAAAGTTGCTTTTGA 465 0.4194 MAFGFMEVELVKAKGLHDTDVFARMDPYVLLQYKGQERKSSVIHEGGRNPVWNEKFVFKVEYPGSGDQYKLNLLIMDKDVFSADDFVGQAAVYVKDLLAEGTEKGSAELRPHKYSVVRADQSYCGEIEVGITFTLKEQEYAEDDDVGGWKQSCF* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0690 154 Pfam C2 domain 6 103 IPR000008 -
Vra6g0690 154 Gene3D C2 domain 3 135 IPR035892 -
Vra6g0690 154 ProSiteProfiles C2 domain profile. 1 107 IPR000008 -
Vra6g0690 154 CDD C2_putative_Elicitor-responsive_gene 4 127 - -
Vra6g0690 154 PANTHER C2 DOMAIN-CONTAINING 1 153 - -
Vra6g0690 154 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 134 IPR035892 -
Vra6g0690 154 SMART C2_3c 5 106 IPR000008 -
Vra6g0690 154 PANTHER ELICITOR-RESPONSIVE PROTEIN 1 1 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0690 Vra-Chr6 6534625 6537332 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0690 3 109 C2H2 Transcription Factor Family AT4G21160 29.907 1.04e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0690 - - gmx:100500493 284.263