Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0683 ATGCCTTCGCTCCAAACAATCATTTCCATTGTTTCCCTCATAACGCTTCTTCTAACTTCCGCCGACGCCCGAATCCCGGGCGTGTACGGTGGCGGCGCGTGGGAGAGCGCGCACGCCACGTTCTACGGGGGGAGCGACGCCTCGGGCACAATGGGCGGCGCGTGCGGGTACGGGAACCTGTACAGCCAGGGCTATGGCGTCAACACTGCTGCGCTTAGCACGGCGCTGTTCAACAGCGGGCTGAGCTGCGGAGCGTGCTTCGAGATAAAGTGCGCGAACGACCCCAGCTGGTGCCACGCTGGCAGTCCCTCGATCTTGGTTACGGCCACGAACTTCTGCCCTCCGAACTACGCTCTACCCAGCGACAATGGAGGATGGTGCAACCCTCCCAGACCACACTTCGACCTCGCCATGCCCATGTTCCTCAAAATCGCAGAGTACCGCGCCGGCATCGTCCCTGTCTCTTACCGCAGGGTGCCTTGTAGAAAACAGGGAGGGATGAGGTTCACGATCAACGGCTTCCGTTACTTCAACCTGGTTTTGATCACCAACGTGGCGGGTGCAGGGGACGTGGTGAGGACGAGCGTGAAAGGGTCTAAGACTGGGTGGATGAGTATGAGCCGTAACTGGGGTCAGAATTGGCAATCAAACGCTGTTCTTGTTGGTCAGTCACTCTCCTTCAGGGTCACAGCCAGTGACCGGCGCACCTCCACCTCCTGGAACATTGTACCTGCGAATTGGCAATTTGGCCAAACCTTCACCGGCAAAAATTTCAGGGTCTGA 783 0.5849 MPSLQTIISIVSLITLLLTSADARIPGVYGGGAWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNSGLSCGACFEIKCANDPSWCHAGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGMRFTINGFRYFNLVLITNVAGAGDVVRTSVKGSKTGWMSMSRNWGQNWQSNAVLVGQSLSFRVTASDRRTSTSWNIVPANWQFGQTFTGKNFRV* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0683 260 SUPERFAMILY Barwin-like endoglucanases 33 184 IPR036908 -
Vra6g0683 260 PRINTS Expansin signature 64 78 IPR002963 GO:0009664
Vra6g0683 260 PRINTS Expansin signature 91 102 IPR002963 GO:0009664
Vra6g0683 260 PRINTS Expansin signature 105 115 IPR002963 GO:0009664
Vra6g0683 260 PRINTS Expansin signature 124 141 IPR002963 GO:0009664
Vra6g0683 260 PRINTS Expansin signature 141 154 IPR002963 GO:0009664
Vra6g0683 260 PRINTS Expansin signature 165 177 IPR002963 GO:0009664
Vra6g0683 260 PRINTS Expansin signature 177 198 IPR002963 GO:0009664
Vra6g0683 260 PRINTS Expansin signature 212 233 IPR002963 GO:0009664
Vra6g0683 260 PRINTS Expansin signature 241 257 IPR002963 GO:0009664
Vra6g0683 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 255 IPR007117 -
Vra6g0683 260 Pfam Lytic transglycolase 69 156 IPR009009 -
Vra6g0683 260 Pfam Expansin C-terminal domain 167 244 IPR007117 -
Vra6g0683 260 SMART dpbb_1 69 156 IPR007112 -
Vra6g0683 260 PANTHER EXPANSIN-A4 9 259 - -
Vra6g0683 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 166 IPR007112 -
Vra6g0683 260 Gene3D - 22 162 IPR036908 -
Vra6g0683 260 SUPERFAMILY PHL pollen allergen 163 255 IPR036749 -
Vra6g0683 260 PANTHER EXPANSIN-A15 9 259 IPR002963 GO:0009664
Vra6g0683 260 Gene3D - 167 258 IPR036749 -
Vra6g0683 260 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Vra6g0683 260 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Vra6g0683 260 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Vra6g0683 260 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576
Vra6g0683 260 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576
Vra6g0683 260 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0683 Vra-Chr6 6485547 6487582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0683 8 260 Expansin Gene Family AT2G39700 84.585 4.38e-167 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0683 - - gmx:100803242 508.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0230 4 4998691 5000178 Vra6g0683 6 6485547 6487582 ECH
Vra2g0599 2 4713931 4715489 Vra6g0683 6 6485547 6487582 ECH
Vra6g0683 6 6485547 6487582 Vra6g0683 6 6485547 6487582 ECH