Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0678 ATGGCTTCCCATTGGTGTTTCCGCTGCAACAAATTTGTCAGAGTATGGAGACAGGAAATGCCCATGTGTCCAGAATGTGACAGTGGATTCGTCGAAGAGATCGACTCTTCCGGCCGCCCCGTCCATGCCGAACCGCGCCGCCGTAGTTTCCCCGCCGCGGCTGCAATGTACATGATCGGCCACCGTTCCGGTAACTCCAACCAAATTCCCCGTTCCTCTCGTCATCAACATTGCAGAACCGCCAACGGCGACCCGTCTCCGATCAACCCGGTTATCATGCTCCGCGGAGAGGGATCAAGGCACGAGCGTGGCTCCAGCTTCGACCTTTTCTACGACGATGGCGCCGGTACGGGCCTCCGACCACTCCCTCCGAGGATGTCAGAGTTTCTCCTCGGAACAGGCTTCGACCGCGTGATGGACCAACTTTCCAACGTGGAGTCTAACTCCGGGTCTGGGAGGCACGACCAGCACCACGCGCCGGCGTCTAAAGCTGTCGTGGATGCCTTGCCGGAGATTGAGATAAACGCGTCCCATATGGTGACTGAGTCACACTGCGCGGTCTGCAAGGAGCCTTTTGAGCTTTGCACCAGAGCGAGAGAAATGCCATGCAAACACTTATACCATCCAGAATGCATCTTACCGTGGCTCGCAATTCGGAACTCCTGCCCTGTGTGCCGCAAAGAGTTGCCTGTTGAGAACGAACGTGTGGGGTTGGAGCGTGTGGAGGAGGAGGAAGAGAACAACGTGGGGTTGACGATTTGGCGGTTACCGGGCGGAGGGTTTGCTGTGGGAAGGTTGGGGAGAAGAGAGGGTGAGAGAGAGGTTAACGTTCCTCTTGTGTACACGGAAGTGGATGGTGGGTTCAACTTTAACAACGTTGTTATGGGGGAACCCAGAAGGATTTCATGGTCGGTTTCGGAGTCTCGAGGGAGGAGAAGAGGTGGCACGTTTAGAAGAATGTTTAACGGTTTGTTTGGTTGCTTGAGAGGTGGTGGCGTTGGGCCTCAACGTTCTTCTAGCTCTGCTTCTTCGAGAAGCGCGACGAGTACCAGTGTTAGGGCTTCGCGTCCTAACATGGGTCCTTCTTCATCTACGCGTAGGTCTTGGTCAATGGATGTCAACGGTGGAACCAGACCATGGTAA 1143 0.5538 MASHWCFRCNKFVRVWRQEMPMCPECDSGFVEEIDSSGRPVHAEPRRRSFPAAAAMYMIGHRSGNSNQIPRSSRHQHCRTANGDPSPINPVIMLRGEGSRHERGSSFDLFYDDGAGTGLRPLPPRMSEFLLGTGFDRVMDQLSNVESNSGSGRHDQHHAPASKAVVDALPEIEINASHMVTESHCAVCKEPFELCTRAREMPCKHLYHPECILPWLAIRNSCPVCRKELPVENERVGLERVEEEEENNVGLTIWRLPGGGFAVGRLGRREGEREVNVPLVYTEVDGGFNFNNVVMGEPRRISWSVSESRGRRRGGTFRRMFNGLFGCLRGGGVGPQRSSSSASSRSATSTSVRASRPNMGPSSSTRRSWSMDVNGGTRPW* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0678 380 SMART ring_2 185 225 IPR001841 -
Vra6g0678 380 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Vra6g0678 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 232 IPR013083 -
Vra6g0678 380 Pfam Ring finger domain 184 226 IPR001841 -
Vra6g0678 380 SUPERFAMILY RING/U-box 165 231 - -
Vra6g0678 380 MobiDBLite consensus disorder prediction 334 372 - -
Vra6g0678 380 MobiDBLite consensus disorder prediction 64 83 - -
Vra6g0678 380 Pfam Protein of unknown function (DUF1117) 249 356 IPR010543 -
Vra6g0678 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 2 326 - -
Vra6g0678 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 326 - -
Vra6g0678 380 MobiDBLite consensus disorder prediction 64 89 - -
Vra6g0678 380 MobiDBLite consensus disorder prediction 332 380 - -
Vra6g0678 380 Pfam zinc-ribbon 3 34 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0678 Vra-Chr6 6362116 6363258 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0678 160 233 C3H Transcription Factor Family AT5G15820 50.667 1.21e-21 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0678 - K11982 gmx:100789228 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0678 6 6362116 6363258 Vra6g0678 6 6362116 6363258 ECH