Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0673 ATGACAGGGTTTGGCTCATCGTGTGGAGCATGCAAGTTCCTGAGGAGAAAATGCACCAGTGATTGTGTATTTGCTCCTTATTTCTCCTACGACCAAGCTTCATCCCATTTTGCAGCAGTGCATAAGATTTATGGAGCCAGTAACGTCTCCAAGCTACTCTCACATCTTCCAATCCAGAATAGAAGAGATGCTGCCATCACCATATCTTACGAAGCCTTGGCTCGCATGCATGATCCTATTTATGGCTGTGTTGCTCATATCTATGCATTGCAGCAACAGGTTGTGAACTTGCAAGAGGAGATAGATGCTCTTGGAAGCATGGTGGCAAACTCCACAGTTAGTGTTGTAAATTCTGGCACTGTCCAAGCACCAATGTACTCAGACAACGGAATACCTTATGATACTTTGCAGCATGATGCTATGAGGACACAGTATTTTCAAAATAATCTAGCAAACTTTCTTTCAGAAGATGGAAATGCCAGAGCCTTGCAAAGTTTTGAGTCACAGATGAATATAGAGCTTCCTAATGCACACGTGGAAGAACCTTCCTTTGGTGATTCCAACTCCAATCCGTTAGAACAGTTCCTATCTGGAATTGACCAAGAGGTGTTCGTGAATCATCCATGGTTCAAGCATAATGCAGACATAAAGGGCTAG 657 0.4323 MTGFGSSCGACKFLRRKCTSDCVFAPYFSYDQASSHFAAVHKIYGASNVSKLLSHLPIQNRRDAAITISYEALARMHDPIYGCVAHIYALQQQVVNLQEEIDALGSMVANSTVSVVNSGTVQAPMYSDNGIPYDTLQHDAMRTQYFQNNLANFLSEDGNARALQSFESQMNIELPNAHVEEPSFGDSNSNPLEQFLSGIDQEVFVNHPWFKHNADIKG* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0673 218 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Vra6g0673 218 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 215 - -
Vra6g0673 218 PANTHER LOB DOMAIN-CONTAINING PROTEIN 33 1 215 - -
Vra6g0673 218 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0673 Vra-Chr6 6276544 6277730 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0673 1 114 AS2 family AT5G06080 73.684 8.54e-58 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vra6g0673 LOB 1.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0673 K13945 - gmx:100787638 323.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0673 6 6276544 6277730 Vra6g0673 6 6276544 6277730 ECH