Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0670 ATGAAGTCACAGTCACAGCATGAAAAACCAGCAATTATTGGAGATGACAGAAGGAACAATTGGGAAGAAAGAGCTTTTGCAGAAGATGCAGTTGGTAGCATGTGGCCTCCAAGACCTTACTCTTGCACCTTTTGTAAGAGAGAGTTCAGGTCTGCACAAGCTCTTGGTGGTCACATGAATATTCACAGAAGGGACAAGGCTAGACTCAAGCAAAATCATCACACCATCAAATCCTTATTAGGTAATAATAATCATCCTTTTTCTGCACCACTCATCTCCACCCAGATAAACTGTGGCCTTACTCATTCTCATAACTATTCTAGCCAAGCTACTACAATTTCTACAACCAGATCACTCTCACAACAAAATAATTTTTCACCTTCCTCTTCTTCTTCATCCATCTTGAGACAAATGGGGTCTCCTAATTCAGAACAAGCAATGGAGTACAGTTTTGTTGAAACAAGTTTGTCTATGGGTATGAGCACTACCATGTTTGGCCAAAATTCATCACCACCAAACATCAGTTGCAAGAGACTAAAAAACAACATTTCTTCTCTTCCTCTCTTCCTCAGACCACCATGTTCAAATGTAGAACTTCATCACGCAATGGAAGACTTGGATCTTGAACTCAGGCTATAG 639 0.4038 MKSQSQHEKPAIIGDDRRNNWEERAFAEDAVGSMWPPRPYSCTFCKREFRSAQALGGHMNIHRRDKARLKQNHHTIKSLLGNNNHPFSAPLISTQINCGLTHSHNYSSQATTISTTRSLSQQNNFSPSSSSSSILRQMGSPNSEQAMEYSFVETSLSMGMSTTMFGQNSSPPNISCKRLKNNISSLPLFLRPPCSNVELHHAMEDLDLELRL* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0670 212 PANTHER OS07G0101800 PROTEIN 10 212 - -
Vra6g0670 212 MobiDBLite consensus disorder prediction 112 140 - -
Vra6g0670 212 MobiDBLite consensus disorder prediction 1 20 - -
Vra6g0670 212 SUPERFAMILY beta-beta-alpha zinc fingers 37 67 IPR036236 -
Vra6g0670 212 Gene3D Classic Zinc Finger 35 89 - -
Vra6g0670 212 Pfam C2H2-type zinc finger 40 64 - -
Vra6g0670 212 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 10 212 - -
Vra6g0670 212 SMART c2h2final6 40 62 IPR013087 -
Vra6g0670 212 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Vra6g0670 212 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0670 Vra-Chr6 6221946 6222584 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0670 22 212 C2H2 Transcription Factor Family AT5G06070 36.098 4.79e-27 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra6g0670 zf-C2H2_6 1.6e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0670 - - vra:106763320 409.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0670 6 6221946 6222584 Vra9g1038 9 13090431 13092175 ECH
Vra4g0046 4 1510720 1513405 Vra6g0670 6 6221946 6222584 ECH
Vra9g1038 9 13090431 13092175 Vra6g0670 6 6221946 6222584 ECH
Vra6g0670 6 6221946 6222584 Vra6g0670 6 6221946 6222584 ECH
Vra3g0978 3 9844214 9845550 Vra6g0670 6 6221946 6222584 PCT