Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0669 ATGGCTGGGATTTGTTGCGGCGTTGTTGGAGAGGCCGGAGAGACTTCTTCTCCGACCAAGCCTACCTCGCGCCCTTTCTCTCGCCGGAGTTTGGACCAACTGCCTTTAAAATACATCGCCGGAGTGGCAATCCCGGCGCCGGAGAATCCTCGGAAGCGCCAGAAGCTGGATCAGCGCGCTTCTCCGGCGCGGGAGTGTGAAAACGCGATTCAGAGTTCTGAATCGAAGGAAGTCGAGGATGTCTCGCTTACGAATTGTTCGAAGGTTGCTACTTTGGACTCGACAACGGGTGTGGTCCAAGAGGTGTGTCCGAAGTATGGGGTAACCTCGGTTTGTGGCAGGAGGAGGGACATGGAAGACGCAGTTTCAGTGCATCCCTCGTTTTGCCAGGAAAGTCGTGATGAAGATCAGAAAGGGTTTCATTTCTTCGCTGTTTTTGACGGCCACGGATGCTCACACGTGGCGACTATGTGCAAGGAGAGGTTACACGAGATAGTGAAGGAGGAGATTCAAAAAGCGAAAGAGAATTTGGAATGGGAATCGACGATGAAGAAGAGTTTCGCTCGAATGGACGACGAGGTGCAAAGGTGGAGCAGAACCAATGAGACTCGCGCATGCAGGTGCGAGCTTCAGACCCCGCGCTGCGATGCCGTCGGCTCCACCGCGGTCGTCGCCGTCGTCACGTCGGAAAAGATCATCGTGGCCAACTGCGGCGACTCACGCGCCGTGCTCTGCCGGAACAGTGCACCCGTTCCGCTCTCCGACGACCATAAGCCGGATCGACCCGACGAGTTGCTTCGGATCCAAGATGCGGGCGGGCGCGTGATATATTGGGACGGGCCTAGAGTGCTTGGGGTCTTGGCCATGTCAAGAGCTATAGGAGACAACTATCTGAAGCCGTATGTAATTTCGGAACCGGAGGTAACGATAACGGAACGGAGTGAAGAGGATGAGTGTTTGATAATAGGGAGCGACGGGCTTTGGGACACGGTGCAAAACGACACGGCGTGTAAGGTGGCCCGGATGTGTCTAAACGCGCAGAAGGCGGCGGCGTCTCCGGGGAGGGAGTCGGCAGTGGAGTGCTCCGACAAGGCGTGCTCCGACGCCTCCATTCTGCTGACGAAGTTGGCGTTGGTGAGGCACAGTTCCGACAATGTGAGCGTGGTGGTGGTTGATTTGAGGAGAGATGATCCTGATTCCTGA 1203 0.5628 MAGICCGVVGEAGETSSPTKPTSRPFSRRSLDQLPLKYIAGVAIPAPENPRKRQKLDQRASPARECENAIQSSESKEVEDVSLTNCSKVATLDSTTGVVQEVCPKYGVTSVCGRRRDMEDAVSVHPSFCQESRDEDQKGFHFFAVFDGHGCSHVATMCKERLHEIVKEEIQKAKENLEWESTMKKSFARMDDEVQRWSRTNETRACRCELQTPRCDAVGSTAVVAVVTSEKIIVANCGDSRAVLCRNSAPVPLSDDHKPDRPDELLRIQDAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTITERSEEDECLIIGSDGLWDTVQNDTACKVARMCLNAQKAAASPGRESAVECSDKACSDASILLTKLALVRHSSDNVSVVVVDLRRDDPDS* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0669 400 Gene3D - 93 397 IPR036457 -
Vra6g0669 400 CDD PP2Cc 105 350 IPR001932 -
Vra6g0669 400 SMART PP2C_4 93 391 IPR001932 -
Vra6g0669 400 PANTHER ALPHABET, ISOFORM E-RELATED 31 397 - -
Vra6g0669 400 MobiDBLite consensus disorder prediction 15 29 - -
Vra6g0669 400 ProSitePatterns PPM-type phosphatase domain signature. 142 150 IPR000222 GO:0043169
Vra6g0669 400 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 31 397 - -
Vra6g0669 400 ProSiteProfiles PPM-type phosphatase domain profile. 105 393 IPR001932 -
Vra6g0669 400 MobiDBLite consensus disorder prediction 9 31 - -
Vra6g0669 400 MobiDBLite consensus disorder prediction 43 71 - -
Vra6g0669 400 Pfam Protein phosphatase 2C 105 361 IPR001932 -
Vra6g0669 400 SUPERFAMILY PP2C-like 100 394 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0669 Vra-Chr6 6210004 6212055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0669 104 395 PP2C-type Phosphatase Gene Family AT1G07430 63.836 6.79e-144 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0669 K14497 - gmx:100781388 603.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0669 6 6210004 6212055 Vra6g0669 6 6210004 6212055 ECH
Vra3g0987 3 9917677 9919986 Vra6g0669 6 6210004 6212055 PCT