Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0655 ATGGCTCCCTCTTCAGATGTCAACCATCTTTCTCATCCATGCATATACGGGGATTATATTTCTCCTCGCTCAGAGAGAAAGTCTGGTTTCATGAAATGGCTCAGTAAACTTTTCAGAGGTGGGTCTAATAGAGGAAGGGGTGGTCGTCATCTGCATGAGCCAGCAGAGGAAAGCATAGTTTGGGGAGCTCCATCAAGAGCGTTGGATGATCGTGCTAGAGCTCAGAAGGAGAAAGAAGATCTAGGGCATGCAATGGCACTTTCTTCAGCCGAAGATTTAAAGAGACCAAATGCCCGTCAAGGATATAGTTGGGGAGAAGACACTGAAGATGATTACTCAAAGGCACCTATGGATACCCTTAGTTCATCAGCACACCCTCCATTTGCCCCTACTCCATTTTATCCCCACGAATATAGAAGAATATGTGGTGGCTGCAACCAAGAGATAATGTATGGAAATTGTTTGGGGTGCATGGATACGTATTTTCATCCAAATTGCTTTCGCTGTCATTCATGTCGCTATCCCATTACTGAGCGTGAGTTTTCCTTGTCAGGGAAGCATCCATATCATAAATCCTGCTTTAAAGAATTGACTCATCCAAAATGTGAAGTTTGCTTCCAATTTATTCCCATAAATGCAGCTGGGTTGATTGAGTACAGATGCCACCCCTTTTGGTCCCAAAAGTATTGTCCATCTCATGAATATGATAATACAGCTCGTTGCTGTAGTTGTGAAAGATTGGAGCCTCTGAACATAAAATACTATAGACTAGAAGATGGACGAAGTTTGTGTTTAGAGTGCATGGAATCTGCTATAATGGACACTGGTGATTGCCAGCCTCTTTACCATTCTATCAGAGATTACTATGAAGGAATGCAGATGAGAATAGATCAACAAATTCCCATGCTTCTAGTTGAGAGAGAAGCACTTAATGAAGCTATTGTAGGGGAGAAAAATGGTTTTCTACACTTACCAGAAACAAGGGGTCTGTGCCTCTCAGAGGAGCAGACTGTGACCAGTATACATAGAAGGCCAAGAATTGGAGGCCATCGACTGATAGGGATGAGAACTCAACCTCAAAAACTGATTAGAAAATGTGAAGTTACAGCAATTCTTGTTCTTTATGGTCTTCCTAGGTTACTCACTGGTGCTATACTTGCCCATGAGTTGATGCATGGCTGGCTACGCCTTAAAGGTTACCGAAACCTTAACCCTGAAGTAGAGGAAGGCATTTGTCAGGTTCTTTCTTATATGTGGCTTGAGTCAGAAGTAATGCCTAGCTTTCAAAGCATGCCATCAACATCCACAGCTTCTGCTTCTTCTTCCTCCTCCTCCTCCTCAAAGAAGGGTGCAAAGTCTCATGTTGAAAATAAATTGGGTGAGTTTTTCAAGAATCAGATTGTCAATGATTCTTCCCCTGCTTATGGTGGTGGCTTTAGAGCTGCTAATGAAGCTGTTAATAAATATGGTTTGCGTAGAACACTTGACCATATTCATTTGACTGGATTTTTTCCAGTGTAA 1521 0.4221 MAPSSDVNHLSHPCIYGDYISPRSERKSGFMKWLSKLFRGGSNRGRGGRHLHEPAEESIVWGAPSRALDDRARAQKEKEDLGHAMALSSAEDLKRPNARQGYSWGEDTEDDYSKAPMDTLSSSAHPPFAPTPFYPHEYRRICGGCNQEIMYGNCLGCMDTYFHPNCFRCHSCRYPITEREFSLSGKHPYHKSCFKELTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPSHEYDNTARCCSCERLEPLNIKYYRLEDGRSLCLECMESAIMDTGDCQPLYHSIRDYYEGMQMRIDQQIPMLLVEREALNEAIVGEKNGFLHLPETRGLCLSEEQTVTSIHRRPRIGGHRLIGMRTQPQKLIRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLNPEVEEGICQVLSYMWLESEVMPSFQSMPSTSTASASSSSSSSSKKGAKSHVENKLGEFFKNQIVNDSSPAYGGGFRAANEAVNKYGLRRTLDHIHLTGFFPV* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0655 506 PANTHER PROTEIN DA1-RELATED 2 20 506 IPR045218 -
Vra6g0655 506 ProSiteProfiles LIM domain profile. 140 200 IPR001781 -
Vra6g0655 506 MobiDBLite consensus disorder prediction 431 450 - -
Vra6g0655 506 Gene3D Cysteine Rich Protein 129 199 - -
Vra6g0655 506 CDD LIM_DA1 142 194 - -
Vra6g0655 506 Pfam Protein DA1 291 500 IPR022087 -
Vra6g0655 506 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 20 506 - -
Vra6g0655 506 ProSitePatterns LIM zinc-binding domain signature. 142 176 IPR001781 -
Vra6g0655 506 MobiDBLite consensus disorder prediction 69 92 - -
Vra6g0655 506 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 167 - -
Vra6g0655 506 MobiDBLite consensus disorder prediction 431 451 - -
Vra6g0655 506 MobiDBLite consensus disorder prediction 69 85 - -
Vra6g0655 506 SMART lim_4 141 193 IPR001781 -
Vra6g0655 506 Pfam LIM domain 142 195 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0655 Vra-Chr6 6074581 6079481 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vra6g0655 DA1-like 4.3e-99 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0655 - - vun:114193624 1009.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0655 6 6074581 6079481 Vra6g0655 6 6074581 6079481 ECH
Vra3g0997 3 10033589 10038927 Vra6g0655 6 6074581 6079481 PCT