Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0646 ATGAAGACTTTAGGGTTGTCGCATCTTCTCCAAATTCTTACATGCATTCTGCTACTCACTCCCTCATTTTCTAAAGATGATCGAAAGATTTACATAGTCTACATGGGCGAATATCCAAAGGGCATGGAACTCACAGAATCACTTCACACTACTATGGTTCAAAGTGCCATAAGCAGAAAACTTGCACCAGATACTTTGGTACACAGCTACAAGAGTTTCAATGGATTTGTGGCGAGGCTAACCAAAGAAGAATCAGAAAGAATGAAAAGATTGGATGATGTGGTTTCCGTTATTCCAAATAGAGTCCACAGTATCCAAACATCAAGGTCCTGGGACTTTCTTGGCTTCCCTGAAAATGTCCAAAGAACAAAGGAAGAAAGTAACACAATCGTGGGAGTACTGGATACTGGAATTTGGCCAAATTCCTCAAGCTTCACCGACGAAGGCTTTGGTCCACCACCAGAGAAATGGAAAGGAACATGCCATAACTTCACTTGCAATAACAAAATCATTGGAGCAAAATATTTTCGTCTTGGTGGTGTGTTCCCCCAAGGGGACCTGATATCTCCAACTGATACGAGTGGTCACGGCTCTCACTGTGCATCAACCGCGGCTGGAAACCCTGTTAGGAATGCAAATTTGTTTGGGCTTGGCTTAGGAACAGCAAGAGGAGGAGTTCCATTGGCACGTATTGCTGTGTATAAAGTTTGTTGGACAAATGGTTGTGAAACTGCTGATGTTCTTGCAGGATTTGATGCAGCCATTATGGATGGTGTTGACATTATATCTCTTTCAGTGGGATATGGAGAAGTCATATACCCCAATTATTTTGAAGATGACTTTGCAATAGGAGCCTTCCATGCAATGAAGAGAGGCATATTAACTTCTCAAGCTGCAGGCAATTTGGGTCCAAATCCTTACACAATGTCAAATCTTGCACCCTGGTTCATTTCCGTGGCTGCTTCCACCATAGACAGAAAGTTTTTAACCAATCTCCAACTGGGCAATGGCCAAATCTTCAAGGGAATTTCAGTGAATACATTTAGTCCAACACAGAAGAGTTACCCTTTAATTTATGGGGGAGATGCGCCAGCCGCTGTATTTAATAGTTCCGTGTCCAAGTTTTGCTATGAAAATACTTTGGATAGAGCTTTGGTGAAAGGGAAAATTGTTCTGTGTGATGCCGTTACTCCTTCTTTTCCATATTTTGGATATGCGGGATTTGCTTCTGGGGCTGCTGGTCTTATATTTATATTCCCTAGTACAGCCCCTTTAGTTGTGGCAGTTGTATATGCATTGCCAGCGATTAGCATTACCGCAAGTGATGGGAATACCGTATTATCTTATTTAAGGTCAACAAGTAATCCAGCAGCTACCATATTCAAGAGTTATGAAGGAAAAGATTCATCAGCCCCTTACATTGCTCCTTTCTCATCAAGAGGTCCAAATAAGGTCACCCCAAACATTCTTAAGCCTGATATAGCAGCTCCAGGAGTTGAAATTCTAGCTGCATGGTCTCCGATTTCTCCTATTTCTGGCGTTAAAGGAGACAGAAGAGTATCAAATTTCAATATAATATATGGAACGTCAATGGCATGCCCTCATGTTACTGCAGCAGCTGTTTACGTAAAATCATTTCATCCCAACTGGTCTCCTGCTGCAATAAAATCCGCATTGATGACAACTGCAACCCCTATGAATCCTGCACTTAATGTAGAGGCTGAATTTGCTTACGGTGTGGGGCAAATAAATCCTTTGAAGGCAGTAAATCCTGGACTGGTTTACGATGCTGGTGAATCTGATTATATTAGTTTTCTGTGTGGACAAGGTTACAATTCATCATCGCTGCAAAAAATTACAGATGATAACAGCACATGCACATCAGCAAATAAAGGGTCTGTTTTCAACCTTAATCTCCCATCTTTTGCTCTATCAACCCCTCGCTCAAGCTACAACAATGTCACTTTTGGTAGAACTGTTACAAATGTTGGATCAGCTACATCCACATATAAGGCCACAATAACTGCACATCCATCTTCTTTAAATGTTCAAGTACTGCCAAGTGTTTTGGCCTTCTCGTCGTTGGGTCAGAGGCTGTCTTTTACCCTTAAGATTGAAGGAAGCATTAATACAGGCTTGGTTTCCTTTTCTTTGATTTGGGACGATGGCACTTTTAATGTAAGGAGCCCCGTTGTGGTTTATGTTCCATAA 2211 0.4161 MKTLGLSHLLQILTCILLLTPSFSKDDRKIYIVYMGEYPKGMELTESLHTTMVQSAISRKLAPDTLVHSYKSFNGFVARLTKEESERMKRLDDVVSVIPNRVHSIQTSRSWDFLGFPENVQRTKEESNTIVGVLDTGIWPNSSSFTDEGFGPPPEKWKGTCHNFTCNNKIIGAKYFRLGGVFPQGDLISPTDTSGHGSHCASTAAGNPVRNANLFGLGLGTARGGVPLARIAVYKVCWTNGCETADVLAGFDAAIMDGVDIISLSVGYGEVIYPNYFEDDFAIGAFHAMKRGILTSQAAGNLGPNPYTMSNLAPWFISVAASTIDRKFLTNLQLGNGQIFKGISVNTFSPTQKSYPLIYGGDAPAAVFNSSVSKFCYENTLDRALVKGKIVLCDAVTPSFPYFGYAGFASGAAGLIFIFPSTAPLVVAVVYALPAISITASDGNTVLSYLRSTSNPAATIFKSYEGKDSSAPYIAPFSSRGPNKVTPNILKPDIAAPGVEILAAWSPISPISGVKGDRRVSNFNIIYGTSMACPHVTAAAVYVKSFHPNWSPAAIKSALMTTATPMNPALNVEAEFAYGVGQINPLKAVNPGLVYDAGESDYISFLCGQGYNSSSLQKITDDNSTCTSANKGSVFNLNLPSFALSTPRSSYNNVTFGRTVTNVGSATSTYKATITAHPSSLNVQVLPSVLAFSSLGQRLSFTLKIEGSINTGLVSFSLIWDDGTFNVRSPVVVYVP* 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0646 736 Pfam Peptidase inhibitor I9 31 102 IPR010259 -
Vra6g0646 736 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 20 105 IPR037045 -
Vra6g0646 736 Gene3D Peptidase S8/S53 domain 129 602 IPR036852 GO:0004252|GO:0006508
Vra6g0646 736 CDD PA_subtilisin_like 331 460 - -
Vra6g0646 736 ProSiteProfiles Serine proteases, subtilase domain profile. 110 589 - -
Vra6g0646 736 Pfam Fibronectin type-III domain 636 733 IPR041469 -
Vra6g0646 736 Pfam Subtilase family 127 581 IPR000209 GO:0006508|GO:0008236
Vra6g0646 736 PRINTS Subtilisin serine protease family (S8) signature 126 145 IPR015500 -
Vra6g0646 736 PRINTS Subtilisin serine protease family (S8) signature 192 205 IPR015500 -
Vra6g0646 736 PRINTS Subtilisin serine protease family (S8) signature 527 543 IPR015500 -
Vra6g0646 736 ProSitePatterns Serine proteases, subtilase family, histidine active site. 196 206 IPR022398 -
Vra6g0646 736 PANTHER PUTATIVE-RELATED 20 734 - -
Vra6g0646 736 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 20 734 IPR045051 -
Vra6g0646 736 SUPERFAMILY Subtilisin-like 106 593 IPR036852 GO:0004252|GO:0006508
Vra6g0646 736 ProSitePatterns Serine proteases, subtilase family, serine active site. 528 538 IPR023828 -
Vra6g0646 736 Gene3D - 606 735 - -
Vra6g0646 736 Gene3D - 325 467 - -
Vra6g0646 736 CDD Peptidases_S8_3 105 564 IPR034197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0646 Vra-Chr6 6007548 6016193 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0646 27 734 Subtilisin-like Serine Gene Family AT5G59100 47.507 0.0 628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0646 - - var:108336584 1205.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0646 6 6007548 6016193 Vra3g1002 3 10067153 10071482 PCT