Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0644 ATGGAGACTCGGGTGAAATTATTTTTAAAACTTGCACCAGATACTTTGGTACACAGCTACAAGAGTTTCAATGGATTTGTAGCGAGGCTAACCAAAGAAGAATCAGAAAGAATGAAAGGAATGGATGTGGTGGTTTCTGTTATTCCAAATAGAATCCACAGTGTCCAAACAACAAGGTCATGGGACTTTCTTGGCTTCCCTGAAAATGTCCCAAGAACGGAGGTAGAAAGTAACACAATCGTTGGAGTAATCGACAGTGGAATTTGGCCTACTTCCTCTAGCTTCACCGACGGAGACTTTGGTCCACCACCACAGAAATGGAAAGGAACATGCTATAACTTCACTTGTAATAACAAAATCATTGGAGCAAAATATTTTCGTCTTGATGGTGATTTCGCCGAGGAGGACAGAATATCTCCAACTGATACCACTGGTCACGGGTCTCATTGTGCATCAACTGCGGCTGGAAACCCTGTTAGGAATGCATATTTATTTGGGCTTGGCTTAGGAACAGCAAGAGGAGGAGTTCCATTAGCACGTATTGCTGTGTATAAAGTTTGCTGGACAAATTATTGTAAAAGTGCTGACATTCTTGCAGGATTTGATGCAGCCATTACGGATGGTGTTGACATTATATCTCTTTCAGTGGGACCTACAAAAGTCATGCACATGGAATATTTTGAAGATATATATGCAATAGGAGCCTTCCATGCAATGAAGAGAGGCATATTAACTTCTCAAGCTGCAGGCAATTTGGGTCCTTTTCCTTACACAATGTCAAATCTTGCACCCTGGTTCATTTCCGTGGCTGCTTCCACCATAGACAGAAAGTTTTTAACCAAACTCCAACTGGGCAATGGCCTAATCTTCCAGGGAATTTCAGTGAATACATTTAGTCCAACACAGAAGAGTTACCCTTTAATTTATGCGGGAGATGCACCAGCCGCTGGATCTAAAAGTTCCACATCCAGCAAAAGCCTTGAAAATTATTTGGATGGAGCTTTGGTGAAAGGGAAAATTGTTTTGTGTGATGGCTATACTCCTTCTCAATATGTGGGATTTGCTTCTGGGGCTGCTGGTCTTATATTTATATTCCCTAGTACAGCCCCTTTAGTTGTGGCAGATATATATGCATTGCCAGCTATTAGCATTACCGCAAGTGATGGGGATACCGTATTTTCTTATTTAAGGTCAACAAGTCGTGATTATCTGATTTATATGTCATGTCACCGATTATTGAGTAATCCAGCAGCTACCATATTCACGAGTTACGAAGGAAAAGATTCATGGGCCCCGTACATTGCTCCTTTCTCATCAAGAGGTCCAAATAAGGTCACTCCAAATATTCTTAAGCCTGATATAGCAGCTCCAGGAGTTGATATTCTGGCTGCATGGTCTCCGATTTCTCCTATTTCTGGTGTTAAAGGAGACAGAAGAGTATCATATTTCAATGTAATATCTGGAACGTCAATGGCATGCCCTCATGTTACTGCAGCAGCTGCTTACGTCAAATCATTTCATCCCAACTGGTCTCCTGCTGCAATAAAATCCGCGCTGATGACAACTGCTACTCCTATGAATCCTGTACTTGATGTACATGCTGAATTTGCTTACGGTGCGGGGCAACTCAATCCTTTGAAGGCAGCAAATCCTGGACTAGTTTATGATGCTGGTGAATATGATTATATTAGTTTTCTGTGTGGACAAGGTTATAGTTCATTAGCGCTGGAAATAATTACAGGAGATAACAGCAATTGCACATCAGCAAATAAAGGGTCTGTTTTCAACCTTAATCTCCCATCTTTTGCTCTATCAACCCCTCGGTCAAGCTACAACAATGTCACTTTTGGTAGAACTGTCACAAATGTTGGATCAGCTACATCCACATATAAGGCCACAATAACTGCATATCCATCTTCTCTAAATGTCCAAGTACTGCCAAATGTTTTGGCCTTTTCATCGTTTGGTCAGATGCTGTCTTTTACCCTTAAGATTGAAGGAAGCATTAATGCGGACTTGGTTTCTTTTTCTTTGATTTGGGACGATGGCACTTTTAAGGCAAGGAGCCCCGTTGTTGTTTATGTTCCATAA 2091 0.4132 METRVKLFLKLAPDTLVHSYKSFNGFVARLTKEESERMKGMDVVVSVIPNRIHSVQTTRSWDFLGFPENVPRTEVESNTIVGVIDSGIWPTSSSFTDGDFGPPPQKWKGTCYNFTCNNKIIGAKYFRLDGDFAEEDRISPTDTTGHGSHCASTAAGNPVRNAYLFGLGLGTARGGVPLARIAVYKVCWTNYCKSADILAGFDAAITDGVDIISLSVGPTKVMHMEYFEDIYAIGAFHAMKRGILTSQAAGNLGPFPYTMSNLAPWFISVAASTIDRKFLTKLQLGNGLIFQGISVNTFSPTQKSYPLIYAGDAPAAGSKSSTSSKSLENYLDGALVKGKIVLCDGYTPSQYVGFASGAAGLIFIFPSTAPLVVADIYALPAISITASDGDTVFSYLRSTSRDYLIYMSCHRLLSNPAATIFTSYEGKDSWAPYIAPFSSRGPNKVTPNILKPDIAAPGVDILAAWSPISPISGVKGDRRVSYFNVISGTSMACPHVTAAAAYVKSFHPNWSPAAIKSALMTTATPMNPVLDVHAEFAYGAGQLNPLKAANPGLVYDAGEYDYISFLCGQGYSSLALEIITGDNSNCTSANKGSVFNLNLPSFALSTPRSSYNNVTFGRTVTNVGSATSTYKATITAYPSSLNVQVLPNVLAFSSFGQMLSFTLKIEGSINADLVSFSLIWDDGTFKARSPVVVYVP* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0644 696 ProSitePatterns Serine proteases, subtilase family, serine active site. 488 498 IPR023828 -
Vra6g0644 696 ProSitePatterns Serine proteases, subtilase family, histidine active site. 146 156 IPR022398 -
Vra6g0644 696 Gene3D - 275 427 - -
Vra6g0644 696 Pfam Fibronectin type-III domain 596 693 IPR041469 -
Vra6g0644 696 CDD Peptidases_S8_3 55 524 IPR034197 -
Vra6g0644 696 PRINTS Subtilisin serine protease family (S8) signature 76 95 IPR015500 -
Vra6g0644 696 PRINTS Subtilisin serine protease family (S8) signature 142 155 IPR015500 -
Vra6g0644 696 PRINTS Subtilisin serine protease family (S8) signature 487 503 IPR015500 -
Vra6g0644 696 SUPERFAMILY Subtilisin-like 56 553 IPR036852 GO:0004252|GO:0006508
Vra6g0644 696 ProSiteProfiles Serine proteases, subtilase domain profile. 60 549 - -
Vra6g0644 696 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 8 694 IPR045051 -
Vra6g0644 696 CDD PA_subtilisin_like 282 420 - -
Vra6g0644 696 PANTHER CUCUMISIN-LIKE 8 694 - -
Vra6g0644 696 Pfam Subtilase family 77 541 IPR000209 GO:0006508|GO:0008236
Vra6g0644 696 Pfam Peptidase inhibitor I9 13 52 IPR010259 -
Vra6g0644 696 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 7 55 IPR037045 -
Vra6g0644 696 Gene3D - 566 695 - -
Vra6g0644 696 Gene3D Peptidase S8/S53 domain 79 562 IPR036852 GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0644 Vra-Chr6 5977332 5981460 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0644 11 694 Subtilisin-like Serine Gene Family AT5G59100 48.080 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0644 - - var:108336584 1110.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1002 3 10067153 10071482 Vra6g0644 6 5977332 5981460 PCT