Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0643 ATGGGCGAATATCCGAAGGGCGTGGAATTCACAGAGTCACTTCACACTAGTATGGTTCAAAGTGTCATCAGCAGAAAACTTGCACCAGATACTTTGGTACACAGCTATAAGAGTTTCAATGGATTTGTGGCGAGGCTAACCAAAGAAGAATCAGAAAGAATGAGAGGAATGGATGAGGTGGTTTCTGTTATTCCAAATAGAATTCACAGTATCCAAACAACAAGGTCCTGGAACTTCATTGGCTTCCCTGAAAATGTCCAAAGAACAAAGGTAGAAAGGGGATATGCGATCAACATATTCCCCAATTATTTTGAAGATATATATGCAATAGGAGCCTTCCATGCAATGAAGAGAGGCATATTAACTTCTGCAGCTGCAGGCAATTTTGGTCCAGATCTTTGCAGAATGTCAAATCTTGCACCGTGGTTCATTTCCGTGGCTGCTTCCACTACAGACAGAAAGTTTTTAACCAATCTCCAACTCGGCAATGGCCGAATCTTCCATCCTGATATAGCAGCTCCAGGAGTTGAAATTCTGGCTGCATGGTCTCCGATTTCTCCTATTTCTGAACTTAAAGGAGACAGAAGAGTATCAAATTTGAATATAATATCTGGAACTTCAATGGCATGCCCTCATGTTACTGCAGCAGCTGCTTACGTCAAATCATTTCATCCCAACTGGTCTCCTGCTGCAATCAAATCCGCGTTGATGACAACTGCTACTGCTATGAATTCTGCACTTAATGAAGAGGCTGAATTTGCTTACGGTGCGGGGCAAATAAATCCTTTGAAGGCAGTAAATCCTGGACTGGTTTACGATGCTGGTGAATCTGATTATATTAGTTTTCTGTGTGGACAAGGTTACAATTCATCATCGCTGCAAAAAATTACAGATGATAACAGCACATGCACATCAGCAAATAAAGGGTCTGTTTTCAACCTTAATCTCCCATCTTTTGCTCTATCAACCGATGGCTCAAGCTACAACAATGTCACTTTTGGTAGAACTGTCACAAATGTTGGATCAGCTACATCCAAATATAGGGCCACAATAACTGCACATCCATCCTCGTTAAATGTCCAAGTACTGCCAAATGTTTTGGCCTTCTCGTCATTGGGTCAGAGGCTGTCTTTTACCCTTAATATTAAAGGAAGCATTAATGTGGGCTTGGTTTCTTTTTCTTTGATTTGGGACGATGGCACTTTTAAGGCAAGGAGCCCCGTTGTTGTTTATGTTTCATAA 1242 0.4138 MGEYPKGVEFTESLHTSMVQSVISRKLAPDTLVHSYKSFNGFVARLTKEESERMRGMDEVVSVIPNRIHSIQTTRSWNFIGFPENVQRTKVERGYAINIFPNYFEDIYAIGAFHAMKRGILTSAAAGNFGPDLCRMSNLAPWFISVAASTTDRKFLTNLQLGNGRIFHPDIAAPGVEILAAWSPISPISELKGDRRVSNLNIISGTSMACPHVTAAAAYVKSFHPNWSPAAIKSALMTTATAMNSALNEEAEFAYGAGQINPLKAVNPGLVYDAGESDYISFLCGQGYNSSSLQKITDDNSTCTSANKGSVFNLNLPSFALSTDGSSYNNVTFGRTVTNVGSATSKYRATITAHPSSLNVQVLPNVLAFSSLGQRLSFTLNIKGSINVGLVSFSLIWDDGTFKARSPVVVYVS* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0643 413 SUPERFAMILY Subtilisin-like 101 267 IPR036852 GO:0004252|GO:0006508
Vra6g0643 413 Pfam Peptidase inhibitor I9 12 68 IPR010259 -
Vra6g0643 413 ProSiteProfiles Serine proteases, subtilase domain profile. 1 266 - -
Vra6g0643 413 Pfam Subtilase family 109 258 IPR000209 GO:0006508|GO:0008236
Vra6g0643 413 ProSitePatterns Serine proteases, subtilase family, serine active site. 205 215 IPR023828 -
Vra6g0643 413 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 99 165 IPR045051 -
Vra6g0643 413 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 166 411 IPR045051 -
Vra6g0643 413 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 12 92 IPR045051 -
Vra6g0643 413 Pfam Fibronectin type-III domain 313 410 IPR041469 -
Vra6g0643 413 Gene3D - 283 412 - -
Vra6g0643 413 Gene3D Peptidase S8/S53 domain 15 282 IPR036852 GO:0004252|GO:0006508
Vra6g0643 413 PANTHER CUCUMISIN-LIKE 166 411 - -
Vra6g0643 413 PANTHER CUCUMISIN-LIKE 12 92 - -
Vra6g0643 413 PANTHER CUCUMISIN-LIKE 99 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0643 Vra-Chr6 5944252 5947415 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0643 1 88 Subtilisin-like Serine Gene Family AT5G58830 41.304 2.50e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0643 - - vra:106763313 822.002