Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0642 ATGGATAATCAACAAAGTTGTATCATATTTCCTCTTAAACTCCTCTTTCTCTATGCCACAGAGATCAGACACAGAATCCACTCCCTCCACCACACTACTGATGCCTTGAATGTGAAACAAGACTCGCATGTGTGTGCTTCACCTACTCCAATTTTTGTCTATGAGAACAGAAAACTTGCCCCAGATACCTTGGTACACAGCTACAGGAGTTTCAATGGATTTGTAGTGAGGCTAACCAAAGAAGAATCAGAAAGAATGAAAGGATTGGATGATGTGGTTTCCGTTATTCCAAATAGAGTTCACAGTATCCAAACATCAAGTTCCTGGGGCTTTCTTGGCTTCCCTGAAAATGTTGAAAGAACAAAGGAAGAAAGTAACACAATCGTGGGAGTACTGGATACTGGAATTTGGCCAAATTCCTCAAGCTTCTCCGACGAAGGCTTTGGTCCACCACCACAGAAATGGAAAGGAACATGCCTTAACTTCACTTGCAATAACAAAATAATTGGAGCAAAATATTTTCGTCTTGGTGGTGAGTTCGCCCAAGAGGACATGATATCTCCAACTGATACGATTGGTCACGGCTCTCACTGTGCATCAACTGCTGCTGGAAACCATGTTAGCAATGCAAATTTATTAGGGCTTGGTTTAGGAACAGCAAGAGGAGGAGTTCCATCAGCACGCATTGCTGTGTATAAAGTTTGTTGGACAAATGGTTGTGAAGCTGCTGACATTCTTGCAGGATTTGATGCAGCCATTATGGATGGTGTTGACATTATATCTCTTTCAGTGGGATATGGAGAAGTCATACACGTGGAATATTTTAAAGATGTATTTGCAGTAGGAGCCTTCCATGCAATGAAGAGAGGCATATTAACTTCTCAAGCTGCAGGCAATTCGGGTCCAAACCTTTACACAATGCCAAATCTTGCACCGTGGATCACTTCCGTGGCTGCTTCCACCATAGACAGAAAGTTTTTAACCAATCTCCAACTTGGCGATGGCCGAATCTTCCAGGGAATTTCAGTGAATACATTTAGTCCAGCACAGAAGAGTTACCCTTTAATTTATGGGGGAGATGCACCAGCTGCTGGATTTAGTAGTTCCACATCCAGGTTTTGCGATGAAAATTCTTTGGATGGAGCTATGGTGAGAGGGAAAATTGTTTTGTGTGATGGCTTTTCTTCTTCTCCATATGTGGGATTTGCTTCTGGGGCTGCTGGTCTTATATTCACTGATCAATTTGTGGCAGAAGTATTTGCTTTGCCAGCTATTAGCATTACCGCAAGTGATGGGAAATCCGTATTTTCTTATTTAAAGTCAACAAGGTATAAAACTTTTCTTCAATCTATAAAAGATCATACATTGGTGATGTATAATTTTGTTCAATTTAATCCAGCAGCTACCATATTCAAGACTCACGAAGGAAAAGATTCATCAGCCCCTTACATTGCTCCTTTCTCATCAAGAGGTCCAAATAAGGTCACTCCAAATATTCTTAAGCCTGATATAGCTGCTCCAGGAGTTGACATTCTGGCTGCATGGTCTCCGATTTCTCCTATTTCTGGTGTTAAAGGAGAGACAAGAGTAACAAATTTCAAAATAGCATCTGGAACGTCAATGGCATGCCCTCATGTTTCTGCAGCAGCTGCTTACGTCAAATCATTTCATCCCAACTGGTCTCCTGCTGCTATAAAATCCACGTTGATGACAACTGCTACTCCTATGAATCCTGCACTTGATGTAGATGCTGAATTTGCTTACGGTGCGGGGCAACTCAATCCTTTGAAGGCAGTAAATCCTGGACTAGTTTATGATGCTGGTGAATATGATTATATTAGTTTTCTGTGTGCAGAAGGTTATGGTTCTAGAGCGCTGCGAAGAATTACAGGAGATAACAGCACATGCACATCAGAAAATACAGGGTCTGTTTTCAACCTTAATCTCCCATCTTTTGCTCTATCAACCCCTCGCTCAAGCGACAACAATGTCACTTTCGGTAGAACTGTCACAAATGTTGGATCAGCTACATCCACATATAAGGCCATAATAACTGCACATCCATCTTCTTTAAATGTCCAAGTACTGCCAAGTGTTTTGGCCTTCTCGTCATTGGGTGAGAGGCTGTCTTTTACCCTTAAGATTGAAGGAAGCATTAATGCGGACTTGGTTTCTTTTTCTTTGATTTGGGACGATGGCACTTTTAAGGCAAGGAGTCCCATTGTTGTTTATGTTCCCTAA 2241 0.4159 MDNQQSCIIFPLKLLFLYATEIRHRIHSLHHTTDALNVKQDSHVCASPTPIFVYENRKLAPDTLVHSYRSFNGFVVRLTKEESERMKGLDDVVSVIPNRVHSIQTSSSWGFLGFPENVERTKEESNTIVGVLDTGIWPNSSSFSDEGFGPPPQKWKGTCLNFTCNNKIIGAKYFRLGGEFAQEDMISPTDTIGHGSHCASTAAGNHVSNANLLGLGLGTARGGVPSARIAVYKVCWTNGCEAADILAGFDAAIMDGVDIISLSVGYGEVIHVEYFKDVFAVGAFHAMKRGILTSQAAGNSGPNLYTMPNLAPWITSVAASTIDRKFLTNLQLGDGRIFQGISVNTFSPAQKSYPLIYGGDAPAAGFSSSTSRFCDENSLDGAMVRGKIVLCDGFSSSPYVGFASGAAGLIFTDQFVAEVFALPAISITASDGKSVFSYLKSTRYKTFLQSIKDHTLVMYNFVQFNPAATIFKTHEGKDSSAPYIAPFSSRGPNKVTPNILKPDIAAPGVDILAAWSPISPISGVKGETRVTNFKIASGTSMACPHVSAAAAYVKSFHPNWSPAAIKSTLMTTATPMNPALDVDAEFAYGAGQLNPLKAVNPGLVYDAGEYDYISFLCAEGYGSRALRRITGDNSTCTSENTGSVFNLNLPSFALSTPRSSDNNVTFGRTVTNVGSATSTYKAIITAHPSSLNVQVLPSVLAFSSLGERLSFTLKIEGSINADLVSFSLIWDDGTFKARSPIVVYVP* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0642 746 PANTHER CUCUMISIN-LIKE 56 744 - -
Vra6g0642 746 ProSiteProfiles Serine proteases, subtilase domain profile. 108 599 - -
Vra6g0642 746 CDD PA_subtilisin_like 329 443 - -
Vra6g0642 746 ProSitePatterns Serine proteases, subtilase family, histidine active site. 194 204 IPR022398 -
Vra6g0642 746 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 56 744 IPR045051 -
Vra6g0642 746 CDD Peptidases_S8_3 103 574 IPR034197 -
Vra6g0642 746 Gene3D Peptidase S8/S53 domain 127 612 IPR036852 GO:0004252|GO:0006508
Vra6g0642 746 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 22 103 IPR037045 -
Vra6g0642 746 ProSitePatterns Serine proteases, subtilase family, serine active site. 538 548 IPR023828 -
Vra6g0642 746 PRINTS Subtilisin serine protease family (S8) signature 124 143 IPR015500 -
Vra6g0642 746 PRINTS Subtilisin serine protease family (S8) signature 190 203 IPR015500 -
Vra6g0642 746 PRINTS Subtilisin serine protease family (S8) signature 537 553 IPR015500 -
Vra6g0642 746 SUPERFAMILY Subtilisin-like 110 600 IPR036852 GO:0004252|GO:0006508
Vra6g0642 746 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 129 139 IPR023827 -
Vra6g0642 746 Pfam Fibronectin type-III domain 646 743 IPR041469 -
Vra6g0642 746 Gene3D - 616 745 - -
Vra6g0642 746 Pfam Subtilase family 125 591 IPR000209 GO:0006508|GO:0008236
Vra6g0642 746 Gene3D - 323 477 - -
Vra6g0642 746 Pfam Peptidase inhibitor I9 40 100 IPR010259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0642 Vra-Chr6 5931938 5936828 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0642 59 744 Subtilisin-like Serine Gene Family AT5G59100 47.218 0.0 604
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0642 - - var:108336584 1142.87