Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0641 ATGGGCGAATATCCCAAGGGCATAGAATTCACTGAATCACTTCACACTGATATGGTTCAAAGAGTCATCAGCAGCAAATTTGCACCAGATACTTTGGTGCACAGCTACAAGAGTTTCAATGGATTTGTGGGGAGGCTAACCAAAGAAGAATCAGAAAGAATGAAAGGAATGGATGATGTGGTTTCTGTTATTCCAAATAGAGTCTACAGTGTCCAAACATCAAGGTCCTGGAACTTCCTTGGCTTCCCAGAAAATGTCCAAAGGTCAAAGGTAGAAAGTAACACAATCGTTGGAGTAATCGACAGTGGAATTTGGCCTAATTCCTCTAGCTTTACCAATGGAGGCTTTGGTCGACCACCACAGAAATGGAAGGGAACATGCCATAACTTCACTTGCAATAACAAAATAATTGGAGCAAAATATTTTCGTCTTGGTGGTGCTTTCGCCGAAGAGGACATCATATCTCCAGCTGATACGAGTGGTCATGGGTCTCACTGTGCATCAACTGCTGCTGGAAACCATGTTAGCAATGCAAATTTGTTAGGGCTTGGCTTAGGAACAGCGAGAGGAGGAGTTCCATCAGCACGCATTGCTGTGTATAAAGTTTGTTGGACAAATGGTTGTGAAACTGCTGACATTCTAGCAGGTTTTGATGCAGCCATTATGGATGGTGTTGATATTATATCTCTTTCATTGGGACCTAAAACCGTCATACGCATGGAATATTTTGAAGATCCAATTGCAATAGGAGCTTTCCATGCAATGAAGAGAGGCATATTAACTTCGAAATCTGCAGGCAATTCGGGTCCAAACCTTTACACGATGACAAATTCTGCACCATGGTTCATTTCCGTGGCTGCTTCCACTATAGACAGAAAGTTTTTAACCAATCTCCTATTGGGCAATGGCCAAATCTTCCATGGAATTTCAGTGAATACATTTAGTCCAACACAGAAGAGTTACCCTTTAATTTATGGGGGAGATGCACCAGCTGCTGGATTTAATAGTTCACTGTCCAGGTCTTGCCTTGACGATTCTTTGAATGGAGCTTTGGTGAGAGGGAAAATTGTTTTGTGTGATGACAATATTTATACTTCTCCTTCGAAAGTGGGATTTGCTTCTGGGGCTGCTGCTGTTATATTCAGAAGTACATCACCTTTGGTTGTGGCAGATGTATATGCATTGCCAGCAATTCACATTACTGCAACTGATGGGAATTCCGTATCTTCTTATTTAAAGTCAATAAGTAATCCAGCAGCTACCATATTCAAGAGTTACGAAGGAAAAGATTCATCAGCCCCTTATATTGCTCCTTTCTCATCAAGAGGTCCAAATAAAGTCACCCCAAACATTCTTAAGCCTGATATAGCAGCTCCAGGAGTTGACATCCTGGCTGCATGGTCTCCGATTTCTCCTATTTCTGATGTTAAAGGAGAGAAAAGAGTATCAAATTTGAATATAATATCTGGAACTTCAATGGCATGCCCTCATGTTACTGCAGCAGCTGCTTACGTCAAATCATTTCATCCCAACTGGTCTCCTGCTGCAATCAAATCCGCGTTGATGACAACTGCTACCCCTATGAATCCTGCACGTAATGTCGAGGCTGAATTTGCTTACGGAGCGGGGCAAATCAATCCTTTGAAGGCAGTAAATCCTGGACTAGTTTATGATGCTGGTGAAAATGATTATGTTAGTTTTCTGTGTGGACAAGGTTATAGTTCATCAGCGCTGCGAATAATTACAGGAGATAACAGCACTTGCACATCAGCAAATAAAGGGTCTGTTTTCAACCTTAATCTCCCATCTTTTGCTCTATCAACCCCTCGTTCAAGCTACAACAATGTCACTTTTCGTAGAACTGTTACAAATGTTGGATCAGCTACATCCAAATATAGGGCCACGATAACTGCACATCCATCTTCTTTGAAGGTCGAAGTACTGCCAAATGTTTTGGCCTTCTCATCGTTGGGTCAGAGGCTGTCTTTTACCCTTAATATTGAAGGAAGCATTAATGCAGGCTTGGTTTCTTTTTCTTTGATTTGGGATGACGGCACTCTTAAGGCAAGGAGCCCCGTTGTTGTTTATGTTCCATAA 2097 0.4182 MGEYPKGIEFTESLHTDMVQRVISSKFAPDTLVHSYKSFNGFVGRLTKEESERMKGMDDVVSVIPNRVYSVQTSRSWNFLGFPENVQRSKVESNTIVGVIDSGIWPNSSSFTNGGFGRPPQKWKGTCHNFTCNNKIIGAKYFRLGGAFAEEDIISPADTSGHGSHCASTAAGNHVSNANLLGLGLGTARGGVPSARIAVYKVCWTNGCETADILAGFDAAIMDGVDIISLSLGPKTVIRMEYFEDPIAIGAFHAMKRGILTSKSAGNSGPNLYTMTNSAPWFISVAASTIDRKFLTNLLLGNGQIFHGISVNTFSPTQKSYPLIYGGDAPAAGFNSSLSRSCLDDSLNGALVRGKIVLCDDNIYTSPSKVGFASGAAAVIFRSTSPLVVADVYALPAIHITATDGNSVSSYLKSISNPAATIFKSYEGKDSSAPYIAPFSSRGPNKVTPNILKPDIAAPGVDILAAWSPISPISDVKGEKRVSNLNIISGTSMACPHVTAAAAYVKSFHPNWSPAAIKSALMTTATPMNPARNVEAEFAYGAGQINPLKAVNPGLVYDAGENDYVSFLCGQGYSSSALRIITGDNSTCTSANKGSVFNLNLPSFALSTPRSSYNNVTFRRTVTNVGSATSKYRATITAHPSSLKVEVLPNVLAFSSLGQRLSFTLNIEGSINAGLVSFSLIWDDGTLKARSPVVVYVP* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0641 698 PRINTS Subtilisin serine protease family (S8) signature 92 111 IPR015500 -
Vra6g0641 698 PRINTS Subtilisin serine protease family (S8) signature 158 171 IPR015500 -
Vra6g0641 698 PRINTS Subtilisin serine protease family (S8) signature 489 505 IPR015500 -
Vra6g0641 698 Gene3D - 568 697 - -
Vra6g0641 698 Gene3D Peptidase S8/S53 domain 95 564 IPR036852 GO:0004252|GO:0006508
Vra6g0641 698 Pfam Peptidase inhibitor I9 12 70 IPR010259 -
Vra6g0641 698 Pfam Subtilase family 93 543 IPR000209 GO:0006508|GO:0008236
Vra6g0641 698 CDD Peptidases_S8_3 69 526 IPR034197 -
Vra6g0641 698 ProSitePatterns Serine proteases, subtilase family, serine active site. 490 500 IPR023828 -
Vra6g0641 698 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 1 71 IPR037045 -
Vra6g0641 698 Pfam Fibronectin type-III domain 598 695 IPR041469 -
Vra6g0641 698 Pfam PA domain 321 407 IPR003137 -
Vra6g0641 698 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 13 696 IPR045051 -
Vra6g0641 698 ProSitePatterns Serine proteases, subtilase family, histidine active site. 162 172 IPR022398 -
Vra6g0641 698 SUPERFAMILY Subtilisin-like 72 555 IPR036852 GO:0004252|GO:0006508
Vra6g0641 698 Gene3D - 291 429 - -
Vra6g0641 698 CDD PA_subtilisin_like 297 422 - -
Vra6g0641 698 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 97 107 IPR023827 -
Vra6g0641 698 ProSiteProfiles Serine proteases, subtilase domain profile. 76 551 - -
Vra6g0641 698 PANTHER CUCUMISIN-LIKE 13 696 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0641 Vra-Chr6 5921184 5927078 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0641 1 696 Subtilisin-like Serine Gene Family AT5G59100 47.183 0.0 621
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0641 - - var:108336584 1182.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0641 6 5921184 5927078 Vra6g0641 6 5921184 5927078 ECH