Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0640 ATGAACTCTTTAGGGTTGTCGCGTCTTCTCCAAATTCTTACATGCATTCTGTTACTCACTCCCACATTTTCTAAAGATGATCGAAAGATTTACATAGTCTACATGGGCGAATATCCGAAGGGCGTGGAACTTACACAATCACTTCATACTAGTATCGTTCAAAGTGCCATAAGCAGAAAACTTGCCCCAGATACTTTGGTGCACAGCTACAGGAGTTTCAATGGATTTGTAGCGAGGATGACCAAGGAAGAATCAGAAAGAATGAAAGGAATGGATGAGGTGGTTTCTGTTATTCCAAATAGAATCCACAGTATCCAAACAACAAGGTCCTGGAACTTCATTGGCTTCCCTGAAAATGTCAAAAGATCAAAGGTAGAAAGTGACACAATCGTTGGAATACTCGATACTGGAATTTGGCCTAATTCCTCAAGCTTCAGCGACAGAGGCCTTGGTCCACCACCACAGAAATGGAAAGGATCATGCCAAAACATCACTTGTAATAACAAAATAATTGGAGCAAAATATTTTCGGGTTGATGCTGATATTGCCGACACCATATCTCCCATTGATACGTTGGGTCACGGGTCTCACACTGCATCGACTGCTGCTGGAAACTCTGTTAGCAATGCAAATCTGTTCGGGCTTGGCTCAGGAACACTGAGAGGAGGAGTTCCATCAGCACGCATTGCTGTGTATAAAGTCTGTTGGAAGAGTGGTTGTAGTACTGCTGACATTTTAGCAGGATTTGATGCAGCCATTGAGGATGGTGTTGACATTATATCTGTTTCATTGGGACCTAGAATGGTCTTTTTCACCGATTATTTTGACGATGAATTTGCAATAGGAGCCTTCCATGCAATGAAGAGAGGCATATTAACTTCAAAAGCTGCAGGCAATGCGGGTCCAAACCGTGACACAATGACAAATCCTGCACCCTGGATCATTACCGTGGCTGCTTCCACTACAGACAGAAAGTTTTTGACCAAACTCCAACTGGGCAATGGCCGAATCCTCGAGGGAATCTCATTGAATACGTTTAGTCCAACACAGAAAAGTTACCCTTTAATTTATGCTGGAGATGCTGGTAGAAGGAATAATTCCATGTCCAGGCTTTGCCGTGAAAATGATTTGGATGAAGCTTTGGTGAAAGGGAAAATTGTGTTGTGTGATGGCTATACTCCTTCTCAGTATGTGGGATTAGCTTCAGGGGCTGCTGGTCTTATATTCACTGGTACATTGACTTCAGATGCGGTAGATGCATTTGCATTGCCAACAATTCAAATTACCACAAGTGATGGGAATTCTGTATCTTCTTATTTAAAGTCAACAAGTAATCCAACAGCTACCATATTCAAAAGTTTCGAAGGAAAAGATTCATCAGCCCCTTACATTGCTTCATTCTCATCGAGAGGTCCAAATAAAGTCACTCCAAACGTTCTTAAGCCTGACATAGCAGCTCCAGGGGTTAACATTCTGGCTGCATGGTCTTCGGTTTCACCTATTTCTGGTGTTAGAGGAGAGAAAAGAGTATCGAATTTGAATATAATATCTGGAACTTCCATGGCATGCCCTCATGTTAGTGGAGCAGCTGCTTACGTCAAATCTAATCATCCCAACTGGTCTCCTGCTGCAATAAAATCAGCGTTGATGACAACTGCTACCCCTATGAATCCTAAACTTGATGTAGATGCTGAATTTGCTTACGGTGCGGGGCAAATCAATCCTTTGAAGGCAGCAAATCCTGGACTAGTTTATGATGCTGGTGAAAATGATTATATTAGTTTTCTGTGTGGACAAGGTTATAATTCATCATCGCTGCAAAAAATTACAGGAGATAAGAGCACTTGCACATCAGCAAAGAAAGGATCGGTTTTCAACCTTAATCTCCCGTCTTTTGCTCTATCAACCACTCGCTCAAGCCACAACAATGTCACTTTTGATAGAACTGTCACAAATGTTGGATCAGCTACATCCAAATATAGGGCCACGATAACTGCACATCCATCTTCTTTGAAGGTCGAAGTAGTGCCAAATGTTTTGGCCTTCTCATCGTTGGGTCAGAAGCTGTCTTTTACCCTTAAGGTTGAAGGAAGCATTAATGCAGACTTGGTTTCTTTTTCTTTGATTTGGGACGATGGAACTTTTAAGGCAAGGAGCCCTGTTGTTGTTTATGTTCCATAA 2181 0.42 MNSLGLSRLLQILTCILLLTPTFSKDDRKIYIVYMGEYPKGVELTQSLHTSIVQSAISRKLAPDTLVHSYRSFNGFVARMTKEESERMKGMDEVVSVIPNRIHSIQTTRSWNFIGFPENVKRSKVESDTIVGILDTGIWPNSSSFSDRGLGPPPQKWKGSCQNITCNNKIIGAKYFRVDADIADTISPIDTLGHGSHTASTAAGNSVSNANLFGLGSGTLRGGVPSARIAVYKVCWKSGCSTADILAGFDAAIEDGVDIISVSLGPRMVFFTDYFDDEFAIGAFHAMKRGILTSKAAGNAGPNRDTMTNPAPWIITVAASTTDRKFLTKLQLGNGRILEGISLNTFSPTQKSYPLIYAGDAGRRNNSMSRLCRENDLDEALVKGKIVLCDGYTPSQYVGLASGAAGLIFTGTLTSDAVDAFALPTIQITTSDGNSVSSYLKSTSNPTATIFKSFEGKDSSAPYIASFSSRGPNKVTPNVLKPDIAAPGVNILAAWSSVSPISGVRGEKRVSNLNIISGTSMACPHVSGAAAYVKSNHPNWSPAAIKSALMTTATPMNPKLDVDAEFAYGAGQINPLKAANPGLVYDAGENDYISFLCGQGYNSSSLQKITGDKSTCTSAKKGSVFNLNLPSFALSTTRSSHNNVTFDRTVTNVGSATSKYRATITAHPSSLKVEVVPNVLAFSSLGQKLSFTLKVEGSINADLVSFSLIWDDGTFKARSPVVVYVP* 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0640 726 PRINTS Subtilisin serine protease family (S8) signature 126 145 IPR015500 -
Vra6g0640 726 PRINTS Subtilisin serine protease family (S8) signature 190 203 IPR015500 -
Vra6g0640 726 PRINTS Subtilisin serine protease family (S8) signature 517 533 IPR015500 -
Vra6g0640 726 PANTHER PUTATIVE-RELATED 20 724 - -
Vra6g0640 726 Gene3D - 596 725 - -
Vra6g0640 726 SUPERFAMILY Subtilisin-like 106 583 IPR036852 GO:0004252|GO:0006508
Vra6g0640 726 Gene3D Peptidase S8/S53 domain 128 592 IPR036852 GO:0004252|GO:0006508
Vra6g0640 726 Gene3D - 323 457 - -
Vra6g0640 726 ProSiteProfiles Serine proteases, subtilase domain profile. 110 579 - -
Vra6g0640 726 Pfam Peptidase inhibitor I9 31 102 IPR010259 -
Vra6g0640 726 Pfam Subtilase family 127 571 IPR000209 GO:0006508|GO:0008236
Vra6g0640 726 CDD PA_subtilisin_like 330 450 - -
Vra6g0640 726 Pfam Fibronectin type-III domain 626 723 IPR041469 -
Vra6g0640 726 ProSitePatterns Serine proteases, subtilase family, serine active site. 518 528 IPR023828 -
Vra6g0640 726 CDD Peptidases_S8_3 105 554 IPR034197 -
Vra6g0640 726 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 20 105 IPR037045 -
Vra6g0640 726 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 20 724 IPR045051 -
Vra6g0640 726 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 131 141 IPR023827 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0640 Vra-Chr6 5909934 5914246 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0640 12 724 Subtilisin-like Serine Gene Family AT3G46850 48.850 0.0 628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0640 - - var:108336584 1123.61