Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0626 ATGTTGGTCACTACTGAGGACAAGTCTCATGTTGTTGTCGTTGACATACACAGTAATGGTTGTTGTCAACGGAGCTCGGCCACCGACGAGGGGGGGTGTTCTGACGCCACCGACCGGTCGCATGAGGAGCAAAGGTCTTCCCATGATCCTGGCACTGAGATAGTGGGAGTGTGTGAGAAGGAGAGAAGATCCTCTGCTTCAGAGTGTTCGGTGGAGGTGGATCTGGAGGAGGGTTCAGTCCCCGAAGTTAAGGTGCATTTGGATAATGTGGAGAGGGATTGTAGGATTTGCCATCTCAGCATGGATATGACCAACCATGAATCTGGTACTCCCATTGAGCTGGGATGCTCTTGCAAGGATGATTTGGCTGCTGCTCACAAGCAGTGTGCTGAGGCTTGGTTCAAGATCAAGGGCAACAAAACATGTGAAATCTGTGGATCAATTGCACGCAATGTAGCTGGAGCTATTGAAATTCAAATGACAGAACAATGGAACGAGGGAAATGATGGTTCGACAGCAGCACAATCTGGAACAGCAGGAGCCACAGAAAGTAGAAATTTCTGGCAGGGTCATCGTTTTTTGAACTTCCTGCTAGCATGTATGGTGTTTGCCTTTGTGATATCATGGCTCTTTCACTTTAATGTACCCTCTTGA 654 0.4817 MLVTTEDKSHVVVVDIHSNGCCQRSSATDEGGCSDATDRSHEEQRSSHDPGTEIVGVCEKERRSSASECSVEVDLEEGSVPEVKVHLDNVERDCRICHLSMDMTNHESGTPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSIARNVAGAIEIQMTEQWNEGNDGSTAAQSGTAGATESRNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0626 217 Pfam RING-variant domain 94 145 IPR011016 GO:0008270
Vra6g0626 217 ProSiteProfiles Zinc finger RING-CH-type profile. 86 152 IPR011016 GO:0008270
Vra6g0626 217 MobiDBLite consensus disorder prediction 23 52 - -
Vra6g0626 217 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 14 217 - -
Vra6g0626 217 PANTHER ZINC FINGER, RING-CH-TYPE 14 217 - -
Vra6g0626 217 CDD RING_CH-C4HC3_MARCH 94 146 - -
Vra6g0626 217 SMART ringv_2 93 146 IPR011016 GO:0008270
Vra6g0626 217 MobiDBLite consensus disorder prediction 34 52 - -
Vra6g0626 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 154 IPR013083 -
Vra6g0626 217 SUPERFAMILY RING/U-box 91 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0626 Vra-Chr6 5739747 5743312 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0626 34 217 C3H Transcription Factor Family AT5G05830 63.978 2.91e-76 226
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0626 6 5739747 5743312 Vra6g0626 6 5739747 5743312 ECH