Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0617 ATGATTTTTCCAAGATTTTGTACGAATCTAAAAGATTCAAATTGGTTTGTGGAAGAGAGCCAAAGCACAGAATGGAGTAGGGAGGATAACAAGAAGTTTGAAAGTGCCCTTGCTATATACGACAAGGACACCCCAGATAGATGGTTCAAGGTGGCAGCCATGATCCCTGGGAAGACTGTGTTCGATGTGATCAAGCAATATAGGGAACTGGAAGAAGATGTGAGTGAAATTGAAGCAGGGCGTGTTCCAATTCCTGGTTATCTTGCCTCTTCTTTCACCTTTGAGCTTGTTCACAACCACAACTATGATGGATGCAGAAGAAGGCCTGCAGCTGTCAGAGGTTCTGATCAAGAGAGAAAGAAAGGGGTCCCCTGGACTGAAGAGGAACACAGACGTTTTCTGATGGGACTTCTCAAGTATGGTAAAGGGGACTGGAGAAATATTTCTCGGAATTTCGTGGTGACAAAGACTCCCACCCAAGTTGCTAGCCATGCACAGAAGTACTACATAAGGCAAAAGGTTTCTGGAGGAAAAGATAAAAGGAGACCCAGCATCCATGATATAACCACTGTTAATCTTACAGAAACTTGTGCATCGGATAAGATCAAGTCTCCTTTATTTAACGTGTCGCCCATGATTACACCGCAGCAGAAGCTGAATAGTATGTCAAAAGTGCAGTTGGACTGGACCAGCCACTGCAATGATGGATCACTCATGGTTTTCAACCCAAACAGAGACAACTTGTTTGTGTCGTCTTCATCTGATATCACTTCCATGGCCCTGAAAATGCAAGGCCAGGATCTCTATGACTGTGCTTTACACGAGGCTTATGCCAAGGTAAAAGTTCCAGGTTTCGGCATGCCTCCCAGAGACTTCAATAATGAAGCTATTTTCGGTATTCATGCACTCTAG 912 0.4408 MIFPRFCTNLKDSNWFVEESQSTEWSREDNKKFESALAIYDKDTPDRWFKVAAMIPGKTVFDVIKQYRELEEDVSEIEAGRVPIPGYLASSFTFELVHNHNYDGCRRRPAAVRGSDQERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKVSGGKDKRRPSIHDITTVNLTETCASDKIKSPLFNVSPMITPQQKLNSMSKVQLDWTSHCNDGSLMVFNPNRDNLFVSSSSDITSMALKMQGQDLYDCALHEAYAKVKVPGFGMPPRDFNNEAIFGIHAL* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0617 303 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 11 284 - -
Vra6g0617 303 SMART sant 121 171 IPR001005 -
Vra6g0617 303 SMART sant 21 73 IPR001005 -
Vra6g0617 303 CDD SANT 24 70 IPR001005 -
Vra6g0617 303 ProSiteProfiles SANT domain profile. 20 75 IPR017884 -
Vra6g0617 303 SUPERFAMILY Homeodomain-like 119 173 IPR009057 -
Vra6g0617 303 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 11 284 IPR043363 -
Vra6g0617 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 117 173 IPR017930 -
Vra6g0617 303 Gene3D - 123 174 - -
Vra6g0617 303 SUPERFAMILY Homeodomain-like 23 77 IPR009057 -
Vra6g0617 303 Pfam Myb-like DNA-binding domain 124 168 IPR001005 -
Vra6g0617 303 CDD SANT 124 168 IPR001005 -
Vra6g0617 303 ProSiteProfiles Myb-like domain profile. 117 169 IPR001005 -
Vra6g0617 303 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 120 172 IPR006447 GO:0003677
Vra6g0617 303 Gene3D - 17 84 - -
Vra6g0617 303 ProSiteProfiles SANT domain profile. 125 173 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0617 Vra-Chr6 5651002 5652842 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vra6g0617 Myb_DNA-binding 1.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0617 - - ccaj:109813886 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0386 10 9136023 9138811 Vra6g0617 6 5651002 5652842 ECH
Vra6g0617 6 5651002 5652842 Vra6g0617 6 5651002 5652842 ECH
Vra3g1022 3 10232953 10235083 Vra6g0617 6 5651002 5652842 PCT