Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0613 ATGCCTTCTTCCGCTTCTTCTGCACCTACCTTCCTCTCCAAATGCACTGTCTTCCCAGACCAACCCTCAACTATGGGAAACCTCAAACTCTCCGTTTCGGACCTCCCCATGTTGTCCTGCCACTATATCCAAAAGGGATGTCTCTTTACCCAACCCACTATTCCACTCCACACTCTAATTCCTCTTCTTAAATCCGCACTCTCTCGCACTCTTTCTCTCTTTCCACCTCTAGCTGGCCGTTTAACCACCGATTCCCACGGTTACGTTTACATCGCTTGCAACGACGCCGGCGTCGATTTCATACACGCCAATGCCGCCGCCCTCCGCGTCTGCGACCTACTGTCCACACTCGACGTCCACGAATGCTTCAAGGAATTCTTCACCTTCGACAGAAAAGTCAGCTACACCGGCCATTACTCCCCGATTCTCGCCGTTCAGGTCACCGAACTCGCTGACGGCCTCTTCATCGGCTGCGCCGTCAATCACGCCGTCACCGACGGCACCTCCTTCTGGAACTTCTTCAACACTTTCGCCCATCTCTGCAGAGCATCGAATAAAAGCTTCCGCAATATACCGGACTTCCACCGCGACTCCGCTCTGATCTCTGACGCCGTCCTCCGCCTACCCGAGGGCGGTCCTCAGGTCACGTTCGATTCTCACGCGCCGCTGCGCGAGAGAATCTTCAGCTTCAGCCGCGAAGCGATTCAGAAGCTGAAGGCAATGACGAACAACCGCCGATGGCCGGAGAGCAACGGCACCGCCGTCGAGTTTATGCGGAAGCAAAGCAACGATCAGTTTCATCACGCGAAGGAGAACAACGGAAAGGCCGGCACAATTCTGGAGAACTGGTTCAAGGTGAATTCGAATTCGAAACCTCAAACGGTTACCGAAACAGTGGAGATTTCGTCGTTTCAATCAGTGTGCGCGTTGCTGTGGCGCGCGGTTACGCGCGCGAGGAAACTGCCTGCGTCCAAAACGACGACGTTCAGAATGGCAGTTAACTGTCGTCATCGAATGGAACCAAAATTGGAACCGTACTACTTCGGGAACGCGATTCAGAGCGTGCCAACGTATGCTTCTGCCGGTGACGTGTTATCGAGGGATCTACGGTGGTGCGCGGAGCAGCTGAACGCAAACGTGAAGGCGCACGACAACGCTATGGTTAGGCGATTCATAGACGATTGGGAGCAGAAACCCAGGTGCTTCCCTCTCGGGAACCCTGACGGTGCATCCATCACTATGGGCAGTTCTCCGAGGTTCCCAATGTACGACAACAATTTCGGGTGGGGGAGACCTCTGGCGGTGAGAAGTGGAAGAGCGAACAAATTCGACGGTAAGATCTCGGCGTTTCCCGGAAGAGACGGAACAGGAACCGTGGATTTGGAAGTGGTTTTAGCGCCCGAAACCATGGAAGCGCTGGAATCTGATCCAGAATTCACGAAATATGCAACGTGTCAGTTGTGA 1464 0.5417 MPSSASSAPTFLSKCTVFPDQPSTMGNLKLSVSDLPMLSCHYIQKGCLFTQPTIPLHTLIPLLKSALSRTLSLFPPLAGRLTTDSHGYVYIACNDAGVDFIHANAAALRVCDLLSTLDVHECFKEFFTFDRKVSYTGHYSPILAVQVTELADGLFIGCAVNHAVTDGTSFWNFFNTFAHLCRASNKSFRNIPDFHRDSALISDAVLRLPEGGPQVTFDSHAPLRERIFSFSREAIQKLKAMTNNRRWPESNGTAVEFMRKQSNDQFHHAKENNGKAGTILENWFKVNSNSKPQTVTETVEISSFQSVCALLWRAVTRARKLPASKTTTFRMAVNCRHRMEPKLEPYYFGNAIQSVPTYASAGDVLSRDLRWCAEQLNANVKAHDNAMVRRFIDDWEQKPRCFPLGNPDGASITMGSSPRFPMYDNNFGWGRPLAVRSGRANKFDGKISAFPGRDGTGTVDLEVVLAPETMEALESDPEFTKYATCQL* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0613 487 Gene3D - 10 207 IPR023213 -
Vra6g0613 487 Pfam Transferase family 10 479 - -
Vra6g0613 487 PANTHER ANTHOCYANIN 5-AROMATIC ACYLTRANSFERASE 9 482 - -
Vra6g0613 487 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 9 482 - -
Vra6g0613 487 Gene3D - 222 478 IPR023213 -
Vra6g0613 487 SUPERFAMILY CoA-dependent acyltransferases 38 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0613 Vra-Chr6 5564355 5566214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0613 62 474 Monolignol Biosynthesis Gene Families AT5G48930 27.488 3.96e-36 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0613 - - vun:114195488 953.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0613 6 5564355 5566214 Vra9g1005 9 12407715 12409624 ECH
Vra6g0613 6 5564355 5566214 Vra6g0613 6 5564355 5566214 ECH
Vra3g1027 3 10286107 10287964 Vra6g0613 6 5564355 5566214 PCT
Vra6g0613 6 5564355 5566214 Vra3g1028 3 10291219 10293121 PCT