Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0612 ATGGACGAGGGCATGTCAGGCTTTTGCATGAGATCAGGAAGTGTTCGTGGGAAAAGTGGAAGCACTACTTCTTCTGCCACTGGCACCAAGTGTGGGCGTTGGAATCCCACAACTGAACAGGTTAAACTTCTAACTGAACTCTTCAGGTCAGGGCTCCGAACCCCAAGCACTGACCAGATTCAAAAGATCTCCACTCAGCTCAGCTTTTATGGTAAGATAGAGAGCAAGAATGTCTTCTATTGGTTTCAGAACCATAAGGCCAGAGAAAGACAGAAGCGCCGCAAGCTCTCCTTTGATGACAAGGATGTCGTCATTCGTAGACAAAACTCCTTCAACATTTCCTCACAAAGTCTTGCTGATATGTATAGAGTTTCAGAGCCAGATAGGGTGATTGAGACGCTTCAACTCTTTCCCATAAACTCCTTTGGGGAATCTGAAGCAGAGAACCTGAGGTTACATGGAAATGAATATAGGGATAGTAGTAGAATGTTTTCATGCACGATGGATGAAGAAATAGAGCACCCACCATTGGAGCTGCGCTTGAGCTTTCTGTAA 555 0.4523 MDEGMSGFCMRSGSVRGKSGSTTSSATGTKCGRWNPTTEQVKLLTELFRSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKLSFDDKDVVIRRQNSFNISSQSLADMYRVSEPDRVIETLQLFPINSFGESEAENLRLHGNEYRDSSRMFSCTMDEEIEHPPLELRLSFL* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0612 184 PANTHER WUSCHEL-RELATED HOMEOBOX 7 1 172 - -
Vra6g0612 184 SUPERFAMILY Homeodomain-like 32 95 IPR009057 -
Vra6g0612 184 Gene3D - 30 98 - -
Vra6g0612 184 MobiDBLite consensus disorder prediction 1 32 - -
Vra6g0612 184 CDD homeodomain 33 93 IPR001356 GO:0003677
Vra6g0612 184 SMART HOX_1 29 96 IPR001356 GO:0003677
Vra6g0612 184 Pfam Homeodomain 31 91 IPR001356 GO:0003677
Vra6g0612 184 ProSiteProfiles 'Homeobox' domain profile. 27 92 IPR001356 GO:0003677
Vra6g0612 184 MobiDBLite consensus disorder prediction 15 32 - -
Vra6g0612 184 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 1 172 IPR044555 GO:0003700|GO:0099402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0612 Vra-Chr6 5556627 5557676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0612 8 184 Wox Gene Family AT3G11260 55.263 5.25e-61 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vra6g0612 Homeodomain 6.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0612 - - pvu:PHAVU_008G226100g 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1030 3 10301915 10302947 Vra6g0612 6 5556627 5557676 PCT