Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0606 ATGGCACCAAAACAAACAAAGGCAGAGAAGAAGATAGCTTACGATGGGAAGCTGTGCCAGCTTCTCGAAGAATACGGTCAAATCCTCGTGGTCAACGCCGACAACGTGGGGTCAAACCAGCTCCAGAACATTCGGAAGGGTCTCCGCGGAGACTCCGTCGTCCTCATGGGGAAGAACACCATGATGAAGCGCTCCGTCAGAATTCACGCTGAGAAAACCGGCAACAACGTGTATCTCAGCCTCATCCCTCTCCTTGTCGGCAATGTGGGTTTGATTTTCACCAAGGGCGACTTGAAGGAGGTCAGTGAAGAGGTTGCCAAGTACAAGGTTGGAGCACCTGCTCGTGTTGGTTTGGTTGCACCAATTGATGTCGTTGTTCCTCCTGGCAACACTGGTCTCGATCCATCTCAGACCTCTTTCTTCCAGGTCCTTAACATTCCGACCAAGATTAACAAGGGTACTGTGGAAATCATTACCCCTGTGGAACTCATTAGGAAGGGAGAAAAGGTTGGATCTTCCGAAGCTGCATTGCTTGCCAAGCTTGGCATAAGGCCCTTCTCATATGGGCTTGTGGTCCTTTCTGTTTATGATAATGGCTCAGTGTTTAGCCCTGAGGTCCTTGATCTTACCGAGGATGACCTCATTGAAAAGTTTGTTGCTGGTGTTTCGATCGCCACTTCTCTTTCATTGGCTATCTCATTCCCAACCCTTGCAGCTGCACCACATATGTTTGTGAACGCCTACAAGAATGTTCTATCTGTTGCTGTTGAGACAGATTACTCTTTCCCTGAGGCAGACAAGGTCAAGGAGTATCTCAAGGACCCAAGCAAATTTGCAGTAGCTGCTGTTGCTGCTCCTGCTGCTGATTCTGGTGCTCCAGCTGCTGCAGCAAAGGAAGAGGAAAAGAAGGAAGAGCCAGCTGAAGAATCTGATGATGACATGGGTTTCAGTTTGTTTGACTAA 963 0.487 MAPKQTKAEKKIAYDGKLCQLLEEYGQILVVNADNVGSNQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHAEKTGNNVYLSLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGEKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLIEKFVAGVSIATSLSLAISFPTLAAAPHMFVNAYKNVLSVAVETDYSFPEADKVKEYLKDPSKFAVAAVAAPAADSGAPAAAAKEEEKKEEPAEESDDDMGFSLFD* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0606 320 SUPERFAMILY Ribosomal protein L10-like 8 134 IPR043141 -
Vra6g0606 320 MobiDBLite consensus disorder prediction 287 320 - -
Vra6g0606 320 Gene3D - 114 185 IPR043164 -
Vra6g0606 320 MobiDBLite consensus disorder prediction 305 320 - -
Vra6g0606 320 Gene3D - 6 209 IPR043141 -
Vra6g0606 320 PIRSF L10E 1 320 IPR030670 GO:0042254
Vra6g0606 320 CDD Ribosomal_P0_L10e 9 185 - -
Vra6g0606 320 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0-1 1 320 - -
Vra6g0606 320 Pfam Insertion domain in 60S ribosomal protein L10P 114 183 IPR040637 -
Vra6g0606 320 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 1 320 - -
Vra6g0606 320 Pfam 60s Acidic ribosomal protein 235 319 - -
Vra6g0606 320 Pfam Ribosomal protein L10 8 108 IPR001790 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0606 Vra-Chr6 5490154 5492353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0606 1 319 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 82.759 0.0 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0606 K02941 - gmx:547816 550.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0606 6 5490154 5492353 Vra6g0606 6 5490154 5492353 ECH