Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0605 ATGGCTTCCTCTTACCGTGACCGCACCTCGGAGTTCCGGTTACTGTCGGAGACTCTGAAGAAGATCGAAGGAGGGACCTCACCTTCGGTTCAACCCGAGATTGCTTCTTCCACCTCTCACGATTCCTATTCAAGATCTGAATTCAACCGAAAGGCCTCACGAATCGGGTTGGGGATCAATGAAACCTCACAGAAGGTGGCGAGGCTGGCGCAGCTGGCGAGGAGGTCGTCCATGTTCAACGATCCGGCCGTGGAGATTCAGGAGCTGACTGTGCTGATTAAGAACGAGATCACGGCGCTGAATTCGGCTCTCTCCGATTTGCAAGCCATTCAGAACATGGACATGGCTGATGGAAGTTACTCGCAGGATAGGATTGTGCATTCAACCGCGGTTTGTGATGACTTGAAGAGCAAACTAATGGGAGCCACGAAGCATCTTCAAGATGTCTTAACTGCTAGGACAGAGAATATCAAGGCTCACGAGAGCAGGAAGCAGATTTTTTCCAAGAATGCATCAAGGGAGAACCCTTTCCAGCATCAACCAAAGCCAGCTACTGAGCCTCCTCCTTGGTCAAATTCATTGAATGCATATGACAATCTGCAACAAGAATCGGTATTACCATCAAATGGAGCTCCTGTTAGCAATCAACTAAGACGAAGGTTGGCAGTGGACAACACTCCAACTCAGCAAATGGAAATGTCTATGGTGCAGCAGGTTGTTCCTCGGCAAGAAAACTACACTCAAAGTAGGTCAACTGCTCTGCACAATGTGGAGTCTACCATCACAGAACTTAGTGGGATTTTCTCGCATTTGGCTACAATGGTTGCCCATCAAGGGGAGCTTGCTATCAGGATTGATGACAACATGGATGAGTCATTAGCGAATGTTGAAGGAGCTCACAGCTCTTTATTGAGGCATCTCAACCGAATATCATCAAATAGGTGGCTTCTAATAAAGATATTTGCCGTTCTGATACTTTTCCTCTTGATCTTCATATTCTTTGTGGCGTAA 1011 0.4718 MASSYRDRTSEFRLLSETLKKIEGGTSPSVQPEIASSTSHDSYSRSEFNRKASRIGLGINETSQKVARLAQLARRSSMFNDPAVEIQELTVLIKNEITALNSALSDLQAIQNMDMADGSYSQDRIVHSTAVCDDLKSKLMGATKHLQDVLTARTENIKAHESRKQIFSKNASRENPFQHQPKPATEPPPWSNSLNAYDNLQQESVLPSNGAPVSNQLRRRLAVDNTPTQQMEMSMVQQVVPRQENYTQSRSTALHNVESTITELSGIFSHLATMVAHQGELAIRIDDNMDESLANVEGAHSSLLRHLNRISSNRWLLIKIFAVLILFLLIFIFFVA* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0605 336 Pfam SNARE domain 281 332 IPR000727 -
Vra6g0605 336 MobiDBLite consensus disorder prediction 160 193 - -
Vra6g0605 336 MobiDBLite consensus disorder prediction 23 47 - -
Vra6g0605 336 MobiDBLite consensus disorder prediction 23 43 - -
Vra6g0605 336 CDD SNARE_syntaxin5 248 323 - -
Vra6g0605 336 PANTHER SYNTAXIN 4 335 IPR045242 -
Vra6g0605 336 Gene3D - 41 299 - -
Vra6g0605 336 ProSitePatterns Syntaxin / epimorphin family signature. 250 289 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vra6g0605 336 SMART tSNARE_6 239 306 IPR000727 -
Vra6g0605 336 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 244 306 IPR000727 -
Vra6g0605 336 SUPERFAMILY t-snare proteins 44 299 IPR010989 GO:0016020|GO:0016192
Vra6g0605 336 PANTHER SYNTAXIN-31 4 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0605 Vra-Chr6 5474652 5482539 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0605 1 336 SNARE and Associated Proteins AT5G05760 66.568 2.43e-153 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0605 K08490 - gmx:100777383 537.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0605 6 5474652 5482539 Vra6g0605 6 5474652 5482539 ECH