Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0590 ATGAAGAAGAATAATTCAATCTTCTCCGCCGTTACCTTCACCCTCTTCACTGTCACCCTCTTAATCCTCTCTTCACTGTCACCCTCCCATGCCATTGGTTCCGCCTCCACTCTCGCCGTCACCTCTGCCGCCATCTGCGGCGTGGTGGCATCGGAGCCGACACGGCGCATTGCGTGCTACAGCGATGGCCATGTCGTCGCCGTTGCTCCCAACATCTCGTTCTCCGTGATCTCCGGCGGCCTGAGCTACTTCTGCGGCCTCCGGTCCGGCAACTACACTCTTCTCTGCTGGGACACCCTTTCCTACTTCCAAAGCAAGAGACTTTACAACAATGGCACTGTTCTATTCGAGAATCTCGCCCTCGGGGACTTCCAGGTTTGCGCCACCGCGGTCGGCGATGGAGCGGTGTCGTGTTGGAGAACCAATGCCGCCTTCGAATTGCCTTCTAGGTCGGACCGGTTTTCTTCTATTTCGTCTGGTTCGGGTTTTTCTTGCGGAATTTTGAAGGGTAGTAATTGGGTTCGGTGTTGGGGGGTTGAGGCTAGAGCGAGAAAAATGGAGAGTGAGTTTGGGAACGTGTCTATGGTGAGTCTTGTGGCTGGGGAGTCACATGTTTGTGGGTTGAATTCAAGTGGGTATTTGGTTTGTAGAGGAAGTAACGACTTTGGTCAGATTGATGTTCCTGAAGGAGGGGCTTTGGAGTTTTCTGGTCTGGCTCTTGGAGCTGAGCATAGTTGCGCTATTCGGAGATCCAATGGTTCTGTCGTTTGTTGGGGTGGGAGAGGGTTGTTTGAGGTTAATGCCACAAAAGGTGTTTCTTTTGAGGTTCTTGTTTCTGGGTCTAATTTTACTTGTGGATTGACGACTAACAATTTTTCAGTTATTTGTTGGGGTCCTGGTTGGGCTAATACTTCAGGTTATGAAATTCCTTTGCCTCCTATACTTCCAGGGCCTTGCGTTCAATCTTCCTGCAGTGAATGTGGGATATATCCTCAATCCGATTCTCTCTGTTCTGGCTATGGTAACATCTGTAAGCCAAGACCTTGTTGGCCTCCAATGCCAGGGCCAGAGCCACCACAAATGGCACCGCCGCCTGTGGTGGCGGTGCCACCTGCGTCTCGGTCAAGTGCCTTCACCAAAGGGTTATTGGCATTTGCCATTGTTGGATGCGTGGGAGGTGTTACTGGGATATGCAGTGTGATTTATTGCTTATGGACTGGGGTTTGTTTAGGGAAGAAGAAAATTCACAATTCTGTGCAGCCAACAATCACTAGAGGTGGCAGTGTAAACGGTGGTGGTGGTTCTAGCAATAGTATTAGTCCTCCGTCGAGATCATCCACCATTAGGCGTCAAGGGTCGCGGATAATGAGACGCCAAAGGAGTGGAACCTCATCAACAAAGCATCCTGAAAGGGCTGAGGAATTCACCTTGGCTGAGCTTGTTGCAGCTACGGATAATTTCTCCCTTGAGAATAAGATCGGTGCTGGAAGCTATGGCGTTGTTTATAGAGGCAAACTTGCAGATGGCCGTGAGGTGGCAATCAAAAGGGGCGAAACAGGTACAAAGATGAAGAAGTTTCAAGAGAAAGAGAGCGCATTCGAGTCCGAATTGGCCTTCTTGTCCCGTTTACACCACAAGCACTTGGTAAGGCTGGTGGGGTTCTGTGAGGAGAAAGACGAGAGGCTCTTGGTGTATGAGTACATGAAGAATGGAGCATTGTATGATCATTTGCATGACAAAAACAATGTGGACAAGAGTAGCAGTGTCTTGAATTCTTGGCGAATGAGGATCAAAATCGCTCTGGATGCTTCGCGAGGAATTGAGTATCTCCATAACTACGCAGTTCCATCTATAATTCACCGAGACATAAAGTCTTCAAACATTCTCATTGACGCGACTTGGACTGCGAGAGTATCCGATTTTGGATTGTCATTGATGAGTCCAGAATCTGACCTTGATTACCGGCCAACGAAGGCAGCAGGAACAGTAGGATATATTGATCCTGAATATTATGGTCTAAATGTATTGACAGCAAAGAGTGATGTCTATGGTCTTGGAGTGGTACTGCTAGAGCTATTAACAGGAAAGAGAGCAATATTCAAGAATGATGAAAATGGAGGCACCCCAGTGAGTTTGGTGGACTTTGCAGTGCCAGTTATTATGGCAGGAGAATTGGCAAAAATTTTGGACCCAAGGGTTGAACCACCAGAGTTAAATGAGACAGAAGCAGTGGAGTTAGTGGCATATACAGCTATGCATTGTGTAAATTTGGAGGGGAAGGACAGACCAACAATGGCTGATATTGTGGCAAATTTGGAGCGTGCTTTGGCTCTTTGTGATAGTAGTCATGGCAGCATTTCCAGTGGTACAGTCTCCATTGTATCAGACTGA 2391 0.4806 MKKNNSIFSAVTFTLFTVTLLILSSLSPSHAIGSASTLAVTSAAICGVVASEPTRRIACYSDGHVVAVAPNISFSVISGGLSYFCGLRSGNYTLLCWDTLSYFQSKRLYNNGTVLFENLALGDFQVCATAVGDGAVSCWRTNAAFELPSRSDRFSSISSGSGFSCGILKGSNWVRCWGVEARARKMESEFGNVSMVSLVAGESHVCGLNSSGYLVCRGSNDFGQIDVPEGGALEFSGLALGAEHSCAIRRSNGSVVCWGGRGLFEVNATKGVSFEVLVSGSNFTCGLTTNNFSVICWGPGWANTSGYEIPLPPILPGPCVQSSCSECGIYPQSDSLCSGYGNICKPRPCWPPMPGPEPPQMAPPPVVAVPPASRSSAFTKGLLAFAIVGCVGGVTGICSVIYCLWTGVCLGKKKIHNSVQPTITRGGSVNGGGGSSNSISPPSRSSTIRRQGSRIMRRQRSGTSSTKHPERAEEFTLAELVAATDNFSLENKIGAGSYGVVYRGKLADGREVAIKRGETGTKMKKFQEKESAFESELAFLSRLHHKHLVRLVGFCEEKDERLLVYEYMKNGALYDHLHDKNNVDKSSSVLNSWRMRIKIALDASRGIEYLHNYAVPSIIHRDIKSSNILIDATWTARVSDFGLSLMSPESDLDYRPTKAAGTVGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAIFKNDENGGTPVSLVDFAVPVIMAGELAKILDPRVEPPELNETEAVELVAYTAMHCVNLEGKDRPTMADIVANLERALALCDSSHGSISSGTVSIVSD* 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0590 796 Gene3D - 33 187 IPR009091 -
Vra6g0590 796 ProSitePatterns Protein kinases ATP-binding region signature. 493 515 IPR017441 GO:0005524
Vra6g0590 796 Gene3D Phosphorylase Kinase; domain 1 448 567 - -
Vra6g0590 796 ProSiteProfiles Protein kinase domain profile. 487 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0590 796 SUPERFAMILY RCC1/BLIP-II 68 301 IPR009091 -
Vra6g0590 796 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 1 793 IPR044815 GO:0004674
Vra6g0590 796 Pfam Protein kinase domain 488 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0590 796 Gene3D Transferase(Phosphotransferase) domain 1 568 785 - -
Vra6g0590 796 MobiDBLite consensus disorder prediction 421 450 - -
Vra6g0590 796 Gene3D - 188 310 IPR009091 -
Vra6g0590 796 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 1 793 - -
Vra6g0590 796 MobiDBLite consensus disorder prediction 421 471 - -
Vra6g0590 796 Pfam Regulator of chromosome condensation (RCC1) repeat 196 224 - -
Vra6g0590 796 SUPERFAMILY Protein kinase-like (PK-like) 465 772 IPR011009 -
Vra6g0590 796 SMART serkin_6 487 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0590 796 ProSitePatterns Serine/Threonine protein kinases active-site signature. 618 630 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0590 Vra-Chr6 5317339 5320140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0590 7 796 Receptor kinase-like Gene Family AT3G55950 60.440 0.0 880
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vra6g0590 Pkinase 5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0590 - - gmx:100798905 1298.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0590 6 5317339 5320140 Vra6g0590 6 5317339 5320140 ECH
Vra3g1203 3 12807499 12810195 Vra6g0590 6 5317339 5320140 PCT