Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0588 ATGGCTGTGTCCAACGGCGTCGAAGCAGTGTTAGAGTTTCTGCGGAAGAATGGCTTGTCGGAGGCGGAGTCCGCGCTCCGAGAAGACATCATCGAGAACACCGACCTCGGAAACTTCGACTACGAGAAGTTCTTCTTCCCCATGGTCCCGCCGCCGCCGCCGGTCAGAGTCCGATCCTTCTCCCGACCGTCCGAGCTCGCCGCCGCGGACGACGGCTCCTCCAAATCCAGCGCGGACGAGTTCGTCACCATCGATTCTTCCACTTCTCACGTCTCTTCTTCAGAATTCGTAAATCCATATGGAATCCGTTCCTCGTCTCAGACTCAGAATGATTCGGAGTCTTCGTCTGAAAGATTATCTCAGTTTGGCACAGCACGTGATTATCACGATTTTGATATGCAAAATGAACCGTATTGGTATAATGAAAAAGATGAAGACTATTTCATGACTCCTAATTTTGAAGGGCCAGACTATTTTGCGTATCAGAGTGAAGATAAGTTTGTCATGACAGCAGAAACGGACAACCAACGGGACAATTCTCTGCATCTTGGTTCCAACTATGAAGAATTTCAATTAAAGGGGAATAGTAATGGTGGTTACATGGACAAGGCATGCCTTGATAATCATTCCTCTGTAGTGGATGGAACTGTGACTCATTCAAAAGGGTTTTGTCATGTTGATAACAAGGACCAGTTTAAAGGGGAATTAGAGGGTAAGGCTGAGAAACCCAGTGTTTCCTGCAGTTGTGAAGTTCCATTTTGCAAAAGCAGTCCTGGTTCTGGAGGTTCTTGCAGTCTGGATCCTACAAACTTCAATTACCCTAACTTGAAGGAAATCCATCTGAACAATTTTCATTTGGGGGTTGTTGGGGACGTTAACTCTTTTGATTCTACTTCAGAGCTAACTCTGAATCAAAGTTTTGACCACTACACTAAAAACGACAGCAGTAAGGAGTACAAGGGTCCTTACGACTTAACTATCGAAGTTATTGATAAAAATCTACCAAATGGACTTGACACCTTTAAAGCACAACTTGGTGGAGAATTAACTGAAGACTGTCAAGATCCAGAGCTTGCTGCAGATGGAGAGGATACAACTGATGATGAGCTCTTGAAGTATACTCAAGAGGAGGAATACGAAGTGTTTGATCTGAGAATTATACATAGAAAGAACAGGACCGGATTTGAAGAAAACAAGGAACTTCCGATTGTGCTAAATACAGTCTTGGCTGGAAGGTATTATTTGACCGAGTATCTTGGTTCAGCTGCCTTCAGTAGGGTTGTTCAGGCACATGACCTTCAGACTGGGATAGATGTTTGTTTGAAGATTATTAAAAATGACAAAGACTTCTTTGATCAAAGCTTAGATGAAATCAAGCTTCTGAAACTTGTCAATAAGGGTGACCCAGCAGATAAACATCACATTTTGCGCCTTTATGACTATTTCTACCATCAGGAGCATTTATTCATTGTAACTGAACTTCTGCGAGCAAACTTGTATGAATTTCAGAAATTCAACCAAGAATCTGGAGGGGAAGCATATTTTACATTAAAGAGATTGCAGATCATTACTCGTCAGTGTTTGGAAGCATTGCAATACTTGCATGGCTTGGGAATTGTTCACTGTGACCTGAAGCCAGAAAACATTCTAATCAAAAGTTACAAAAGATGTGAGATAAAGGTTATTGATCTTGGAAGTAGTTGCTTCCAAACAGACAATCTGTGCCTATATGTACAGTCCAGATCCTATAGAGCTCCTGAAGTGATGTTAGGTCTTCAATATGATGAGAAGATTGATATATGGTCCCTAGGATGCATCTTGGCGGAGCTATGCTCTGGGGAAGTGCTGTTCCCAAATGATGCAGTTGTGATGATTCTGGCACGCATAATTGGAATGTTTGGTTCTATTGATATGGAAATGTTGGTGAAAGGACAAGAAACACACAAGTACTTCACCAAAGAATATGATATTTATTATATAAATGAGGAGACTGATCAACTGGAGTTCTTGATTCCAGAAGAGTCATCATTGGAGCAGCACCTACAGGTTACTGATACTATGTTTATCAACTTTATCAGATACCTACTCTGCGTCAACCCTAAAAGAAGGCCTACTGCAAGACAAGCACTAAAGCATCCATGGCTTTCTTATGTTTACTAA 2160 0.4194 MAVSNGVEAVLEFLRKNGLSEAESALREDIIENTDLGNFDYEKFFFPMVPPPPPVRVRSFSRPSELAAADDGSSKSSADEFVTIDSSTSHVSSSEFVNPYGIRSSSQTQNDSESSSERLSQFGTARDYHDFDMQNEPYWYNEKDEDYFMTPNFEGPDYFAYQSEDKFVMTAETDNQRDNSLHLGSNYEEFQLKGNSNGGYMDKACLDNHSSVVDGTVTHSKGFCHVDNKDQFKGELEGKAEKPSVSCSCEVPFCKSSPGSGGSCSLDPTNFNYPNLKEIHLNNFHLGVVGDVNSFDSTSELTLNQSFDHYTKNDSSKEYKGPYDLTIEVIDKNLPNGLDTFKAQLGGELTEDCQDPELAADGEDTTDDELLKYTQEEEYEVFDLRIIHRKNRTGFEENKELPIVLNTVLAGRYYLTEYLGSAAFSRVVQAHDLQTGIDVCLKIIKNDKDFFDQSLDEIKLLKLVNKGDPADKHHILRLYDYFYHQEHLFIVTELLRANLYEFQKFNQESGGEAYFTLKRLQIITRQCLEALQYLHGLGIVHCDLKPENILIKSYKRCEIKVIDLGSSCFQTDNLCLYVQSRSYRAPEVMLGLQYDEKIDIWSLGCILAELCSGEVLFPNDAVVMILARIIGMFGSIDMEMLVKGQETHKYFTKEYDIYYINEETDQLEFLIPEESSLEQHLQVTDTMFINFIRYLLCVNPKRRPTARQALKHPWLSYVY* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0588 719 MobiDBLite consensus disorder prediction 61 80 - -
Vra6g0588 719 Pfam Protein kinase domain 416 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0588 719 SMART serkin_6 413 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0588 719 Gene3D Phosphorylase Kinase; domain 1 408 494 - -
Vra6g0588 719 ProSitePatterns Serine/Threonine protein kinases active-site signature. 539 551 IPR008271 GO:0004672|GO:0006468
Vra6g0588 719 PANTHER DUAL SPECIFICITY PROTEIN KINASE 8 719 - -
Vra6g0588 719 PANTHER HYPOTHETICAL SER-THR PROTEIN KINASE-RELATED 8 719 - -
Vra6g0588 719 MobiDBLite consensus disorder prediction 91 121 - -
Vra6g0588 719 CDD PKc_DYRK_like 413 715 - -
Vra6g0588 719 Gene3D Transferase(Phosphotransferase) domain 1 467 715 - -
Vra6g0588 719 SUPERFAMILY Protein kinase-like (PK-like) 402 716 IPR011009 -
Vra6g0588 719 ProSiteProfiles Protein kinase domain profile. 413 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0588 Vra-Chr6 5289494 5295062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0588 410 710 MAP Kinase Gene Family AT5G19010 31.153 7.45e-33 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Vra6g0588 Pkinase 3.6e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0588 - - gmx:100783988 1249.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0588 6 5289494 5295062 Vra6g0588 6 5289494 5295062 ECH