Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0584 ATGTGTAGTGATTCAAAGAGTAAGCTTTCTTCTCCGAGTCTGGTGATGGAGAATAATCTTCAGAAGCAGAATCTTGACTGTTTCCGCAATTTTTCGGCTTTACTTGAACTGTCTGCTTCCGATGATTTTGAAGCTTTCAAAAGAGAAGTGGACGAGAAGGGCTTAGATGTCAACGAGGCAGGCTTTTGGTATGGTAGAAGAATTGGGTCAAAGAAGATGGGATCTGAAACGAGGACCCCCCTCATGATTGCTTCTTTGTTCGGAAGTATTAAGGTTCTCAAGTATATTCTTGAGGCAGGAACTGTTGATGTGAACAGGGCCTGTGGTTCTGATAGGGCCACTGCTCTTCATTGCGCTGCCTCTGGAGGCTCTGAATCTTCACCTGAGATTGTGAAGCTCTTGCTAGATGCTGGGGCTGATGCTGAATCCCTTGATGCTACTGGAAACAGGCCGGCTAATCTGATTGCTCCTGCCTTTGATTCTTCTTCCAAATCTCGGAGGAAGACCCTGGAGTTGCTCCTCAGTGGTGGTGAAAGAGATGAACTGGAGCTGCAGATTTTCTCGGCTTCTTTATCAGCAAAAGAAGGCTCTGAGAAAAAAGAAGGAAGTGATAAGAAAGAGTATCCTGTTGATATATCTTTGCCTGATATAAACAACGGTGTGTATGGAACAGATGAGTTTAGGATGTACAGTTTCAAGGTGAAGCCTTGCTCAAGGGCCTACTCCCATGACTGGACTGAGTGTCCATTTGTTCATCCAGGCGAGAACGCAAGGAGGAGAGACCCAAGGAAATACCCTTATAGCTGTGTTCCTTGCCCGGAATTCCGCAAAGGGACCTGCCAGAAGGCTGATTCCTGTGAGTATGCTCACGGTGTTTTCGAGTCCTGGCTACACCCTGCCCAGTACAGAACAAGGCTCTGCAAGGACGAGACTGGCTGCACCAGAAAAGTTTGCTTCTTTGCCCACAAACCTGAAGAGTTACGCCCTGTGTATGCTTCCACCGGGTCAGCTATGCCTTCACCAAAATCCTATTCATCCAGTGCACTAGACATGACATCCATGAGTCCATTGGCTCTCAGTTCCACATCTTTACCTATGCCAACTGTTTCAACCCCACCCATGTCTCCATTGGCAGCAGCTTCATCTCCAAAGAGTGGAAGCTTGTGGCAGAACAAAATAAACCTCACTCCACCATCACTTCAGCTCCCTGGTAGCAGACTCAAGGCTGCTCTGAGTGCCAGGGATCTGGAGATGGAGATGGAGCTGCTCGGTCTAGATAGTCCAGTTCGCCAACAACAGCAGCAGCAGCAACAGTTGATAGAGGAGATTGCCAGAATCTCTTCTCCGTCTTTCCGCAACAAGGAATTCAACAGGATTGGTGATTTGAATCCAACCAACCTTGATAGCCTGTTAGCCTCTGCTGACCCTTCTGTGTTATCACAATTACATGGACTTTCTGTGCAGCCTTCAACACCCACCCAAACGGGGCTTCAGATGCGCCAGAACATGAACCACCTTCGTGCGAGTTATCCATCCAACATCCCTTCCTCTCCTGTGAGGAAGCCCTCAGCTTTTGGGTTTGACTCATCAGCTGCCGTGGCAGCTGCAGTGATGAACTCCAGATCTGCCGCCTTCACCAAGCGAAGCCAAAGTTTCATCGATCGTGGTGCTTCGACCCACCATCTTGGCCTGTCTTCACCTTCCAACCCTTCCTGCAGGGTGTCCTCTACCCTCTCAGATTGGAGCTCCCCAACCGGGAAACTCGATTGGGGTGTCAACGGAGATGAGCTGAACAAGCTCAGGAAATCTGCTTCATTTGGGTTCAGAAACAATGGGGTAACAGCTTCTTCCCCCATGGCTCAGCACGAACATGTTGAGCCAGATGTGTCATGGGTTCATTCGTTGGTTAAGGATGTTCCTTCTGAGAGGTCGGAGATGTTTGGTGGTGAGAAGCAACAGTATGATCTGAGTAAAGAGATGCTGCCACCATGGGTGGAGCAGCTGTACATAGAGCAGGAGCAGATGGTGGCATGA 2034 0.4897 MCSDSKSKLSSPSLVMENNLQKQNLDCFRNFSALLELSASDDFEAFKREVDEKGLDVNEAGFWYGRRIGSKKMGSETRTPLMIASLFGSIKVLKYILEAGTVDVNRACGSDRATALHCAASGGSESSPEIVKLLLDAGADAESLDATGNRPANLIAPAFDSSSKSRRKTLELLLSGGERDELELQIFSASLSAKEGSEKKEGSDKKEYPVDISLPDINNGVYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKADSCEYAHGVFESWLHPAQYRTRLCKDETGCTRKVCFFAHKPEELRPVYASTGSAMPSPKSYSSSALDMTSMSPLALSSTSLPMPTVSTPPMSPLAAASSPKSGSLWQNKINLTPPSLQLPGSRLKAALSARDLEMEMELLGLDSPVRQQQQQQQQLIEEIARISSPSFRNKEFNRIGDLNPTNLDSLLASADPSVLSQLHGLSVQPSTPTQTGLQMRQNMNHLRASYPSNIPSSPVRKPSAFGFDSSAAVAAAVMNSRSAAFTKRSQSFIDRGASTHHLGLSSPSNPSCRVSSTLSDWSSPTGKLDWGVNGDELNKLRKSASFGFRNNGVTASSPMAQHEHVEPDVSWVHSLVKDVPSERSEMFGGEKQQYDLSKEMLPPWVEQLYIEQEQMVA* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0584 677 PANTHER UNKEMPT FAMILY MEMBER 19 676 IPR045234 -
Vra6g0584 677 SMART c3hfinal6 266 292 IPR000571 GO:0046872
Vra6g0584 677 SMART c3hfinal6 301 324 IPR000571 GO:0046872
Vra6g0584 677 ProSiteProfiles Ankyrin repeat region circular profile. 111 145 - -
Vra6g0584 677 Gene3D - 267 329 - -
Vra6g0584 677 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 19 676 - -
Vra6g0584 677 SMART ANK_2a 111 143 IPR002110 GO:0005515
Vra6g0584 677 SMART ANK_2a 76 106 IPR002110 GO:0005515
Vra6g0584 677 Gene3D - 12 208 IPR036770 -
Vra6g0584 677 Pfam Ankyrin repeats (3 copies) 74 142 IPR002110 GO:0005515
Vra6g0584 677 SUPERFAMILY Ankyrin repeat 28 165 IPR036770 -
Vra6g0584 677 ProSiteProfiles Zinc finger C3H1-type profile. 266 293 IPR000571 GO:0046872
Vra6g0584 677 ProSiteProfiles Ankyrin repeat profile. 111 146 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0584 Vra-Chr6 5215815 5218863 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0584 31 672 C2H2 Transcription Factor Family AT5G12850 40.480 7.84e-147 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vra6g0584 Ank_2 8.5e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0584 - - gmx:100783376 1086.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0584 6 5215815 5218863 Vra6g0584 6 5215815 5218863 ECH