Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0577 ATGCATATGGAAAGTTACCACTATTCTTCTGGGTGGCCTCTTGCCACCAACATGGCTCAGTGCAACTCTGCACCAAACAGTGATCAATTATCTCCTTTTTCAGTTCCAACAATTCAAACACCCCCTCTTGCTTCTGACCCTCCATCTCTTCAGTTTACTGAGTTCCCTTTGTGGCCTGCATCCATTGCAGAAGATAGAGTTGCAAGTGCTTCAAAGAGTCACAGCCAAGCAGAGAAAAGGCGCAGAGATAGAATCAATGCACAGCTTGCAACTCTCAGAAAACTCATTCCCAAGTCTGATAAGATGGACAAAGCAGCGTTACTAGGGAGTGTGGTAGACCATGTGAAAGATCTAAGGCGAAAAGCTATGTGTGTGAGCAAAGCAATCACTGTTCCAAGTGAAACTGATGAAGTAACAATTGACTTCCATGAAGCTGAAGATGAAAGCTACAAAAAAGTGAAGAAGAAATTGAAGGAGAAGATGATAATCAAAGCTTCAGTTTGCTGTGATGATCGACCTGAAGTGTTCCCTGAGCTGATCCAAGTTCTAAAAGGGTTGAGACTGACAGCAGTTAAGGCTGACATAGCTAGTGTTGGTGGCAGAATCAAAAGCATATTGGTTCTTTGTTCAAAGGACAGTGAAGACAACAGTGTTTGCCTCACCACTCTCAAACAATCACTTAAATCAGCTGTCAACAAAATTTCTTCGTTATCTGTTGCTACTAATTGTCCCACCAGAAGTAAGAGGCAGAGGTTCTTCTTCCCTTCACATTATTTACAACCATAA 786 0.4224 MHMESYHYSSGWPLATNMAQCNSAPNSDQLSPFSVPTIQTPPLASDPPSLQFTEFPLWPASIAEDRVASASKSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVVDHVKDLRRKAMCVSKAITVPSETDEVTIDFHEAEDESYKKVKKKLKEKMIIKASVCCDDRPEVFPELIQVLKGLRLTAVKADIASVGGRIKSILVLCSKDSEDNSVCLTTLKQSLKSAVNKISSLSVATNCPTRSKRQRFFFPSHYLQP* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0577 261 MobiDBLite consensus disorder prediction 23 46 - -
Vra6g0577 261 Pfam Helix-loop-helix DNA-binding domain 72 118 IPR011598 GO:0046983
Vra6g0577 261 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 118 IPR011598 GO:0046983
Vra6g0577 261 PANTHER TRANSCRIPTION FACTOR BHLH30 33 259 IPR045847 GO:0003700|GO:0006355
Vra6g0577 261 CDD bHLH_AtAIG1_like 64 142 - -
Vra6g0577 261 Coils Coil 140 160 - -
Vra6g0577 261 SMART finulus 75 124 IPR011598 GO:0046983
Vra6g0577 261 PANTHER TRANSCRIPTION FACTOR BHLH51 33 259 - -
Vra6g0577 261 Gene3D - 63 125 IPR036638 GO:0046983
Vra6g0577 261 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 122 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0577 Vra-Chr6 5115109 5116733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0577 3 258 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 40.293 1.78e-45 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra6g0577 HLH 8.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0577 - - gmx:100306102 396.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0577 6 5115109 5116733 Vra6g0577 6 5115109 5116733 ECH
Vra3g1195 3 12727476 12729228 Vra6g0577 6 5115109 5116733 PCT