Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0576 ATGACGGACGTTGGCAACGATCGAGTGAAGGGCTCGTGGAGTCCTCAGGAGGATGCGACACTACTGAAATTGGTGAACCAGTATGGCGCACGGAATTGGTCCCTCATCAGCAGCAGTATTCCGGGGCGTTCTGGCAAGTCCTGCCGGCTGCGATGGTGCAACCAGCTGAGCCCGGAGGTGCAGCACCGCCCCTTCACTTCGGCGGAGGACCAGATCATCATCAAGGCGCACGCTATTCACGGGAACAAGTGGGCCACCATCTCGCGCCTCCTCCCTGGCCGCACAGACAACGCCATTAAAAACCACTGGAACTCCACCCTCCGGCGCCGTAGCACGATGAGTCAGTCGGCGGCGGCGGCATCGCCAAACACCAAGCGCGCCTCTCCGTCGGAGTGGGACCATCCTTTCAAGAAACAGCTTGTGGAGAAAGAAAAAGAGCAGGAGCGAATTGCGATTCCCGTTATCACGCCTTTGAGTCTTTTTCCTTTCGGTGAAAAATCAGATAGAAAAGTTGAGGAGGAAGAGAAAAAAGTGTGGGAAGAATTTAAAGTGAACAATAATAATAACAAGATTTCGAATCAGGACTACTTTCTGCAGGTCATGCGGCGCATGATTGCTGATGAGGTTAGAAATTATCTTCACAGTTTGTGTAAGAGAAGGGAATATGTTCATCCGAATCTTCACAAATAA 690 0.5174 MTDVGNDRVKGSWSPQEDATLLKLVNQYGARNWSLISSSIPGRSGKSCRLRWCNQLSPEVQHRPFTSAEDQIIIKAHAIHGNKWATISRLLPGRTDNAIKNHWNSTLRRRSTMSQSAAAASPNTKRASPSEWDHPFKKQLVEKEKEQERIAIPVITPLSLFPFGEKSDRKVEEEEKKVWEEFKVNNNNNKISNQDYFLQVMRRMIADEVRNYLHSLCKRREYVHPNLHK* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0576 229 Pfam Myb-like DNA-binding domain 10 56 IPR001005 -
Vra6g0576 229 Pfam Myb-like DNA-binding domain 64 106 IPR001005 -
Vra6g0576 229 PANTHER OS01G0850400 PROTEIN 7 195 - -
Vra6g0576 229 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Vra6g0576 229 CDD SANT 64 107 IPR001005 -
Vra6g0576 229 SUPERFAMILY Homeodomain-like 7 103 IPR009057 -
Vra6g0576 229 MobiDBLite consensus disorder prediction 108 132 - -
Vra6g0576 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Vra6g0576 229 ProSiteProfiles Myb-like domain profile. 5 56 IPR001005 -
Vra6g0576 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 56 IPR017930 -
Vra6g0576 229 Gene3D - 63 150 - -
Vra6g0576 229 MobiDBLite consensus disorder prediction 108 128 - -
Vra6g0576 229 PANTHER MYB PROTEIN-RELATED 7 195 - -
Vra6g0576 229 Gene3D - 9 61 - -
Vra6g0576 229 CDD SANT 12 54 IPR001005 -
Vra6g0576 229 SMART sant 9 58 IPR001005 -
Vra6g0576 229 SMART sant 61 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0576 Vra-Chr6 5070823 5071512 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0576 7 138 MYB Transcription Factor Family AT4G37260 61.364 1.23e-53 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra6g0576 Myb_DNA-binding 1.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0576 - - vra:106763298 421.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0576 6 5070823 5071512 Vra6g0576 6 5070823 5071512 ECH