Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0575 ATGTCGATTCGCGATTCCGAATCCTTCAATTGGCACAGCGACGCGGAGCTCGAAGACCAGGACCTCCATATCCGCGGCCAGAAGCTCTTCTTCATCGTCGTCGTTTTCTCGATCGTCCTCCTCTTCACCGCGCTCTTCCTCTTCGCGCGACGGATCTGCCGCCACCACGGCCTCCTCTTCGACGCCGTCCCACCGCACCAGGCGCCGCCGACGCTTCCTTCTCAGGACGACGGCCTCGACGCCGACGCGATCAAGCGGCTACCGATCATACTGCACCAGCGCGCGGCGACGGAGGAGACGGAGTGCTGCATCTGCCTCAGCGCGTTCGTCGACGGCGCGAAGCTGAAGGTTCTCCCTGGATGCGAGCACAGCTTCCACAGCGAGTGCGTGGACAAGTGGCTCGCGAATCACTCCAATTGCCCTCTCTGCAGAGCTTCGCTGAAACTCAACCCTTCGTTACCGAGGATTTTGATCCAATCGCCACCCGTTACAACAACGCTTCCGCTCTGA 510 0.6098 MSIRDSESFNWHSDAELEDQDLHIRGQKLFFIVVVFSIVLLFTALFLFARRICRHHGLLFDAVPPHQAPPTLPSQDDGLDADAIKRLPIILHQRAATEETECCICLSAFVDGAKLKVLPGCEHSFHSECVDKWLANHSNCPLCRASLKLNPSLPRILIQSPPVTTTLPL* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0575 169 Pfam Ring finger domain 101 144 IPR001841 -
Vra6g0575 169 SMART ring_2 102 143 IPR001841 -
Vra6g0575 169 PANTHER RING-H2 FINGER PROTEIN ATL66 3 159 - -
Vra6g0575 169 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 3 159 IPR044675 -
Vra6g0575 169 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Vra6g0575 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 149 IPR013083 -
Vra6g0575 169 SUPERFAMILY RING/U-box 89 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0575 Vra-Chr6 5054207 5055268 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0575 11 152 C3H Transcription Factor Family AT3G11110 40.136 1.23e-28 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0575 - - gmx:100794554 248.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1194 3 12717848 12719044 Vra6g0575 6 5054207 5055268 PCT