Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0574 ATGGCCTCTCTCCAACCTCAACCCCAAGAAACCAAACCCACCGTCACCACCGCCACACCCTCCACTCCCACCCAGACATCTATCACCACCAACAATACTACTGCTCGAAAATGCAAAGGCAAAGGTGGCCCCGACAACAACAAATTTAGGTACCGCGGCGTCAGACAACGAAGCTGGGGCAAATGGGTCGCCGAGATCCGCGAGCCACGTAAGCGCACGCGCAAGTGGCTCGGCACCTTCGCCACCGCAGAAGACGCCGCCAGAGCCTACGACCGTGCCGCCCTCATCCTCTACGGCTCCCGTGCCCAGCTTAATCTCCAACCCTCCGCTTCCTCTTCTCACTCCTCCTCCTCCTCTCGTACCACCTCTTCCTCTTCCACTCAAACCCTAAGACCCTTGCTTCCTCGCCCCGCGGGCTTCGCTTTCAATTTTCCCTTCCACGCCGCCGCCCTTCCCTACCCTTATATCACCACCTTCAATTACACCCCGCAGGCGCTGTGTCCTAATGAGAATAGTAATAATACAGTGCATGCTCATCATCACCATCACCATCACCGCCCTGAGGAATCGGTGCAAGTGCCACATGCTCTATCAACATCATGTCCAAAGTCGGAATCCGATGTGAGTTTAGGTGGGGATAATACTACTGTTAATAGCTCCAGTAGATCAACCTCGTACCAAAGACATGGTTCCGAGGATAATAAACCCGTGCATGTGCGACATGAGGATTCTTCGAATCATCAACAACATCAGAACGGCGATGCGGATGGAGTTAATTCCGTTGTGGGTTCGGCGGAGGGTTCTCAGGCAAATATGGAGGCTTCCGAGGATCCCGATCTGTCGTTGGTGGGGACAGTGGGGCTTGGATCTTCTTCGTCCTTGTGGCCTTTGGCGAATGAGGATGATTACACTGATAATTTGTGGGATTATAATGATCCTTTCTTCTTTGATCTTTAG 957 0.5308 MASLQPQPQETKPTVTTATPSTPTQTSITTNNTTARKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAALILYGSRAQLNLQPSASSSHSSSSSRTTSSSSTQTLRPLLPRPAGFAFNFPFHAAALPYPYITTFNYTPQALCPNENSNNTVHAHHHHHHHRPEESVQVPHALSTSCPKSESDVSLGGDNTTVNSSSRSTSYQRHGSEDNKPVHVRHEDSSNHQQHQNGDADGVNSVVGSAEGSQANMEASEDPDLSLVGTVGLGSSSSLWPLANEDDYTDNLWDYNDPFFFDL* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0574 318 MobiDBLite consensus disorder prediction 107 132 - -
Vra6g0574 318 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Vra6g0574 318 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Vra6g0574 318 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Vra6g0574 318 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Vra6g0574 318 MobiDBLite consensus disorder prediction 1 37 - -
Vra6g0574 318 MobiDBLite consensus disorder prediction 172 277 - -
Vra6g0574 318 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700|GO:0006355
Vra6g0574 318 CDD AP2 50 107 IPR001471 GO:0003700|GO:0006355
Vra6g0574 318 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ABI4 8 316 - -
Vra6g0574 318 MobiDBLite consensus disorder prediction 1 51 - -
Vra6g0574 318 SUPERFAMILY DNA-binding domain 50 108 IPR016177 GO:0003677
Vra6g0574 318 MobiDBLite consensus disorder prediction 250 275 - -
Vra6g0574 318 MobiDBLite consensus disorder prediction 228 249 - -
Vra6g0574 318 MobiDBLite consensus disorder prediction 193 227 - -
Vra6g0574 318 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 8 316 - -
Vra6g0574 318 Pfam AP2 domain 50 99 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0574 Vra-Chr6 5041751 5043251 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0574 36 315 AP2-EREBP Transcription Factor Family AT2G40220 43.131 7.65e-42 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra6g0574 AP2 6.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0574 K09286 - gmx:100779779 345.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0574 6 5041751 5043251 Vra6g0574 6 5041751 5043251 ECH