Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0573 ATGGGAACTTCCGTGCGTGTAAAAGAAGCATCGGTGATTACACCTTCTGAGCCCACTCCACGCTGCGTGCTCGCTCTATCAGCGCTTGATTCGCAACTCTTCCTTCGTTTCACCATAGAGTATCTGTTAGTCTACAAGCCCTCCCCTGGGCTGGACCAGCCTAATACCACGGCTCGTCTAAAATCGGCATTATCCAGAGCCTTGGTTCCCTACTACCCCTTTGCGGGCAGGGTCAGGCCCAAGCCCGAAGGCCCGGGTCTGGAGGTGGTGTGCGCGGCCCAAGGCGCGGTGTTCATAGAAGCCTTCGCTGTCCGTTACAAGGCCAACGACTTTGAAAAAGCGCCTAAAACAGTTACGCAATGGAGGCCGTTGTTGTCGCTCCACGTGGCAGACGTGCTCAAGGGATCCCCGCCGCTGGTGGTTCAGCTGACCTGGCTCGTCGACGGCGCCGCCGCTATAGCCATCGGGATCAACCACTGCCTCTGCGACGGCATCGGCAGCGCGGAGTTTCTCAACCACTTCGCCGAGTTGGCTAACGAGAGACGCGAGACGAGTTACATGCGCATCCAGAAACCGGTTTGGGAGCGTCACCTTCTGAAACCACCTCGCGGGGAGGAGAGGCGGGTGGATTCAGCCAGTCATCCCGAGTTTAGCAGAGTCCCGGACCTATGCAGCTTCATGAACAAGGTCTCAACCGGGCTAAAACCAACGTCGATTACGTTCGACAAGACGCGGCTGAACGAGCTAAAGCGAGTGGCGCAGTGCACGAGCGAAGACGGCGAGGCGGCGCGGTACACTTCGTTCGAGGTACTGGCGGCGCACGTGTGGAGAAGCTGGGCGAGAGCGATAGGGTTTCCGGGGAACCAGAAACTAAAGCTGGTTTTCAGTATAAACGTGCGGAACCGTTTGAAGCCGGGTTTGCCCGAAGGGTATTACGGGAACGCGTTTGTTTTAGGGTGTGCGGAGACGAGTGCGAGGGAGTTAGAAGAGAAAGGGGTGGGGTTCGGGTCGGGTTTGGTGAAGCGGGCGAAGGAGAGGGTGGGGAAAGAGCACGTGAGGGAGGTGATGGAGTGGGTGTGGGAGAGGAAAGGGTGCCCCGACCCGGTTGGGGTGTTGATAGTGTCGCAGTGGTCGAGGCTAGGGTTGGAGAATATTGACGTGGGTTTGGGAAAGGCTTGGCACGTGGGACCCGTTTGCTGCGATAGGTACTGTTTGTTCTTGCCGGTGAGAGATGAGTGTGTTAGTGTGAAGGTCATGGTCGCTGTCCCCACTTCCGCCGTTGACAATTACCACCTTTTCATGCGTTCCTCTCACCTCTGA 1320 0.5758 MGTSVRVKEASVITPSEPTPRCVLALSALDSQLFLRFTIEYLLVYKPSPGLDQPNTTARLKSALSRALVPYYPFAGRVRPKPEGPGLEVVCAAQGAVFIEAFAVRYKANDFEKAPKTVTQWRPLLSLHVADVLKGSPPLVVQLTWLVDGAAAIAIGINHCLCDGIGSAEFLNHFAELANERRETSYMRIQKPVWERHLLKPPRGEERRVDSASHPEFSRVPDLCSFMNKVSTGLKPTSITFDKTRLNELKRVAQCTSEDGEAARYTSFEVLAAHVWRSWARAIGFPGNQKLKLVFSINVRNRLKPGLPEGYYGNAFVLGCAETSARELEEKGVGFGSGLVKRAKERVGKEHVREVMEWVWERKGCPDPVGVLIVSQWSRLGLENIDVGLGKAWHVGPVCCDRYCLFLPVRDECVSVKVMVAVPTSAVDNYHLFMRSSHL* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0573 439 Gene3D - 227 431 IPR023213 -
Vra6g0573 439 Gene3D - 1 218 IPR023213 -
Vra6g0573 439 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 6 433 - -
Vra6g0573 439 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 6 433 - -
Vra6g0573 439 Pfam Transferase family 4 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0573 Vra-Chr6 5024387 5026760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0573 5 434 Monolignol Biosynthesis Gene Families AT5G48930 25.225 1.19e-43 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0573 - - gmx:100817048 756.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0573 6 5024387 5026760 Vra6g0573 6 5024387 5026760 ECH
Vra2g1557 2 23458866 23460364 Vra6g0573 6 5024387 5026760 PCT