Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0572 ATGAAGGGTTACGAGCCACGTTCGAGTTCCTCTTGTGCAGCCTGCAAGTTCTTGAAGCGAAGATGCATACCCAATTGTATATTTGCACCTTACTTTCGTTCTGATGAGTGCAAGAAATTTGCGAAGGTGCACAAGGTTTTTGGAGCCAGCAATGTCAGCAAGATCCTCATCGAAGTTCCCGAGGAGCAGAGAGAGGACACCGTCAATTCTCTTGCTTACGAAGCAGAAGCCAGGCTCAGAGACCCCATTTATGGATGTATCGGTGCCATAGCTCTTCTCCAGAGGAAGATGCTCGAGCTTCAACATGACCTTGCCATTGCTAAGGATCGTCTTGCTCGTTATGCTGCCGCTGCCACCACTCCTTCCGCCGCCATCGCCACCTCCAACAACACCTTCAATTCCCATGTTAGTTTGCCACCCTTCCCTGAATTTTTCTCTTGCAACGATTTCAGTGACAACTTCTGCCACAACTCTTCCTCTCAATCTCCGCCATTGACCAGACACGAAATGGTCGATGATTTCATTCAAATCCCTTATATATTATGA 546 0.478 MKGYEPRSSSSCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPIYGCIGAIALLQRKMLELQHDLAIAKDRLARYAAAATTPSAAIATSNNTFNSHVSLPPFPEFFSCNDFSDNFCHNSSSQSPPLTRHEMVDDFIQIPYIL* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0572 181 Coils Coil 90 110 - -
Vra6g0572 181 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Vra6g0572 181 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 161 - -
Vra6g0572 181 PANTHER LOB DOMAIN-CONTAINING PROTEIN 21 1 161 - -
Vra6g0572 181 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0572 Vra-Chr6 5011945 5012812 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0572 1 116 AS2 family AT3G11090 76.724 3.55e-64 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vra6g0572 LOB 1.7e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0572 - - gmx:100777635 288.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0572 6 5011945 5012812 Vra6g0572 6 5011945 5012812 ECH