Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0571 ATGAATGATGTTCTATCTGCTATGATGGTCTCCCAAGGCTTGTTACCATCTGGGTCTCTGCTAGATTCTTTGATTCATATATCCAAAGAAGTTGATTCAATGGAAAAGTTTCCCTTCGTACACATAAGAAACGTTTCATCCATGATCAGAAGGATCAAGCTTCTTTCTTCTTTGTTTGAAGAGATTAAAGAATCGGGTACTCCACTTCCTCCTTCTTCAATCCTGTGTCTCACAGAACTGTTCTCTGTGATAAGAAGAGTTAAGGTTTTGATCCAAGACTGCAAAGATGGAAGCTCTCTTTGGAGTCTGATACAGTTAGAGTTCATTTCTAACCAATTTTATGTGCTGGTGAAGGAGATGGGAAGGGCCCTTGATATTCTTCCTTTGAGTTTGCTCAATGTAACATCAGATATTAGGGAACAGGTGGAGCTTCTTCACAAGCAAGCAAAGAAGGCTGAGTTATTCGTTGATCCTAGAGAGCTTCATCGAAGAGAACAACTTAAACTAGCAATGGCCAACAACAGTTTACAAAAGAAGAAGAACAAAGGGTTTGTTGACTTTGGAAAAGTGGAAGAAATACTCAGCAGCATTGGTCTGAGAACCCCGTCAGATTATGATGGAGAAATATCAAAGTTAGAGGCTGAAGCTCAGAACCAAGCTGGCACAGGAGGACTCATCATTGTCTCCAATATAAACAACCTCATATCGTTGGTGTCTTATTCCAAAACCATGATATTCAGAGATGGAGAGAGTAGTAGAAATGAAGAAGATTATAAGCCACTGTCTTCATTTTTGTATAACAAAGTTCATGATAGTTCTTCATCTTCTCAGTCCATGACACCTAATGTTCCTGATGAATTTCGTTGTCCAATAACACTTGACTTAATGAGGGACCCCGTGATTGTGTCATCTGGGCACACATATGATAGAACATCAATTGCACAATGGATAAACTCTGGTCATCATACATGCCCCAAAAGTGGGCAAAGGTTAATTCACACTGCTTTAATACCCAACTATGCATTGAAGAGCCTTGTTCAGCAATGGTGCCATGACAACAATGTCCCAGTTAATGAACCTTCAACCGAGGGAAACAACCACAAGAAGAAGAACTCGAAGGAGGAGGCCATCGACCATATTTCTGCAAACAAAGCTGCTGCAGATGCTGTCAAAATGACAGCAGAATTTCTTGTTGGAAAATTGGCAACTGGTTCTGCTGACATCCAAAGGCAAGCTGCATATGAACTTCGGTTACTTGCAAAAACCGGCATGGTCAACCGGAGTGTCATAGCTGAAGTAGGGGCCATTCCCTTTCTTGTAACACTTCTAGGATCTCAAGATTCAAGAATTCAAGAGCATGCAGTGACAACCTTGTTCAACCTCTCCATATTTGACAACAACAAGATTTTGATCATGGCAGCAGGAGCAGTTGATAGCATAGTAGAAGTACTTGAATCAGGGAAGACCATGGAGGCAAGGGAGAATGCAGCAGCAGCAATATACAGCTTGTCTATGGTGGATGAGCTGAAAGTGCATATTGGAGGAAGACCAAGAGCAATACCTGCTTTAGTTAGACTCTTGAAAGAAGGCACTTCAATAGGGAAAAAAGATGCTGCATCTGCACTGTTCAATCTTGCAGTTTACAATCCTAACAAAGTTAGTGCTGTTAAGGCTGGTGCAGTTGCTGTGCTGGTAGAATTGCTGATGGATGACAAGGCTGGCATAACAGATGATGCACTTGCAGTGCTTGCTTCACTCCTTGGTTGCTCTGAGGGATTGGAAGAGATAAGAAATAGTAGAGCGTTGGTGCCACTTCTTATTGATCTTCTGAGATTTGGTTCAGTGAAAGGGAAGGAAAATTCAATAACCCTTTTGCTGGGACTGTGCAAAGAAGAGGGAGAAGTGGTTGCAAGAAGACTCTTGGCAAATCCAAGAAGCATTCCTTCTCTTCAAAGCTTGGCTTCTGATGGATCTTTGAGAGCTAGAAGAAAAGCAGATGCACTGCTCAGACTCCTCAACAGGTGCTGTCCTATAGGAAAAAGCCTATTTTCTTTTCTCACGTTCTGCTCTATGTAG 2076 0.4181 MNDVLSAMMVSQGLLPSGSLLDSLIHISKEVDSMEKFPFVHIRNVSSMIRRIKLLSSLFEEIKESGTPLPPSSILCLTELFSVIRRVKVLIQDCKDGSSLWSLIQLEFISNQFYVLVKEMGRALDILPLSLLNVTSDIREQVELLHKQAKKAELFVDPRELHRREQLKLAMANNSLQKKKNKGFVDFGKVEEILSSIGLRTPSDYDGEISKLEAEAQNQAGTGGLIIVSNINNLISLVSYSKTMIFRDGESSRNEEDYKPLSSFLYNKVHDSSSSSQSMTPNVPDEFRCPITLDLMRDPVIVSSGHTYDRTSIAQWINSGHHTCPKSGQRLIHTALIPNYALKSLVQQWCHDNNVPVNEPSTEGNNHKKKNSKEEAIDHISANKAAADAVKMTAEFLVGKLATGSADIQRQAAYELRLLAKTGMVNRSVIAEVGAIPFLVTLLGSQDSRIQEHAVTTLFNLSIFDNNKILIMAAGAVDSIVEVLESGKTMEARENAAAAIYSLSMVDELKVHIGGRPRAIPALVRLLKEGTSIGKKDAASALFNLAVYNPNKVSAVKAGAVAVLVELLMDDKAGITDDALAVLASLLGCSEGLEEIRNSRALVPLLIDLLRFGSVKGKENSITLLLGLCKEEGEVVARRLLANPRSIPSLQSLASDGSLRARRKADALLRLLNRCCPIGKSLFSFLTFCSM* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0571 691 SMART arm_5 464 505 IPR000225 GO:0005515
Vra6g0571 691 SMART arm_5 382 421 IPR000225 GO:0005515
Vra6g0571 691 SMART arm_5 589 630 IPR000225 GO:0005515
Vra6g0571 691 SMART arm_5 423 463 IPR000225 GO:0005515
Vra6g0571 691 SMART arm_5 507 547 IPR000225 GO:0005515
Vra6g0571 691 SMART arm_5 548 588 IPR000225 GO:0005515
Vra6g0571 691 SMART Ubox_2 286 349 IPR003613 GO:0004842|GO:0016567
Vra6g0571 691 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 518 560 IPR000225 GO:0005515
Vra6g0571 691 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 1 17 678 - -
Vra6g0571 691 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 434 476 IPR000225 GO:0005515
Vra6g0571 691 ProSiteProfiles U-box domain profile. 282 356 IPR003613 GO:0004842|GO:0016567
Vra6g0571 691 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 357 IPR013083 -
Vra6g0571 691 SUPERFAMILY ARM repeat 394 672 IPR016024 -
Vra6g0571 691 CDD RING-Ubox_PUB 287 329 IPR045210 -
Vra6g0571 691 Pfam U-box domain 283 353 IPR003613 GO:0004842|GO:0016567
Vra6g0571 691 SUPERFAMILY RING/U-box 271 357 - -
Vra6g0571 691 PANTHER U BOX DOMAIN-CONTAINING 17 678 - -
Vra6g0571 691 Pfam Armadillo/beta-catenin-like repeat 426 462 IPR000225 GO:0005515
Vra6g0571 691 Gene3D - 514 672 IPR011989 -
Vra6g0571 691 Gene3D - 365 513 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0571 Vra-Chr6 5000698 5004037 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0571 18 674 U-box Gene Family AT3G46510 38.160 6.96e-126 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0571 - - gmx:100793498 1131.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0571 6 5000698 5004037 Vra6g0571 6 5000698 5004037 ECH