Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0569 ATGGAAAAGAACAGGAAACTCAGCCGGTTGCAGGATCTTTGTATAGCTTCGCGCCTTGTGGCGGTTTTTTTCTTGTTTCAGAATTTGGGTTTCTGTTGTTCTTTGAATGAAGAAGGTAATGCTCTTTTGAAGTTCAGGCAGAGAATAGTGAGTGACCCTTTTGGTGCTTTGTCAAATTGGGTGGATGATGATTCATCTTTTGACCCTTGTAATTGGTTTGGAGTTGAGTGCTCAGATGGAAGAGTTGTGGCCTTGAATTTGAAGGATCTCTGCCTTGAAGGAACTCTGGCACCTGAGCTTGCGAAACTTATCCACATAAAGTCCATTATTTTACGGAACAACTCTTTCTCTGGGACAATCCCTGAAGGATTTGTGGAGTTAAAAGAATTGGAGGTTTTGGATTTGGGATACAACAACTTCAGTGGACATATACCTGCTGATCTTGGGAGCAATATCTCACTAGCAATCCTCTTGTTGGATAACAATGAATTTCTTGTTGGTTTCTCTCCGGAAATCAATGAACTGAGGCTGCTTTCTGAGTGCCAAGTGGGTGAAAATCAGCTAACGAGTGCTGCTAAAATGCCAGCGTGTATAGAAAGAGCCACCACATGGCATATTGGTCAAGGTAAAGGTACTACTCGTGGCCTACTGCAACTTCGAAAATCATTTCATCGTACTCATGAAGATCCTCGTAATCGTGCGGCTAATCCACCACAAGAGAAGCCTTCACTTCCTTCTCCTCCTTCACCAGTGCCAAAGCTAACTCCCTCTGAGAAAAATGCTTCTAATTCTCCTACTCCACATTCTACACCAGGTTCTGGAGCACTACCTAAAACTGAAAAAAGCACTTCACCAAAGGTTCATATTTTGGTTGGAGTTATAGGTGGTGCAGTGTTTCTTCTTTTTTCAACCATTGGCTTATATATTTGTAAAACAAAGGTGGTTAATGTCAGACCTTGGGCCACGGGACTAAGTGGACAGCTGGAGAAGGCATTTGTAACTGGTGCTCAAAAGCTAAGGAGATTGAATCTTGAAGTGGCATGTGAAGATTTTAGTAATGTAATTGGCACTTCACCTATTGGCACAGTGTACAAAGGAACTTTGTCCAGTGGCGTTGAAATCGCTGTAATTTCTGTTCCGGTGACATCATCCAAGAATTGGTCAAAGACTTTAGAAGTTCAATTTAGAAACAAGATAGATACATTATCGAAAGTGAACCACAAGAATTTTGTAAATCTTATTGGATACTGTGAAGAGGAGGAGCCTTTCACCAGAATGTTGGTTTTTGAATATGCCCCAAATGGAACACTATTTGAGCATTTACACATAAAAGAGGCTGAGCACTTGGATTGGGTAACAAGGCTTAGAGTTGCAACGGGTATGGCTTATTGCTTGCAGCATATGCACCAATTGGATCCTCCTATGGCCCTTATCAAGCTGAATTCTCAAACTGTTTATTTGACTGATGATTATGCTGCCAAACTCTCAGATTTTAGTTTCTCCTATGAAATAACCTCAGCTGAGACAAAAGCCATTGACATGCCAAAAGCAAGTCTAGAAACTAACGTTTATAGCTTTGGTGCTTTGTTATTTGAGATCGTTACTGGTCGTCTCCCTTATTCAGTGGAACAAAGGGACTCCCTTGAAAACTGGGCATCACACTATATACAAGGAGACCAACCCCTCAAGGATATGGTGGATCCAATTCTTGAATCTTACCAAGAGGGTCAGCTTGAACAAGTTGCTGCATTGATTAAATCTTGTGTGCATCCAGATCCAAAGCAGAGACCAATAATGAAAGATGTCAGTGAGAAGCTAAGAGAGATAACAAAGATAACACCTGAATCAGCAGTTCCAAAACTTTCTCCACTTTGGTGGGCAGAGCTTGAGATTGCTTCTACAGAAGTGCGTTGA 1914 0.4148 MEKNRKLSRLQDLCIASRLVAVFFLFQNLGFCCSLNEEGNALLKFRQRIVSDPFGALSNWVDDDSSFDPCNWFGVECSDGRVVALNLKDLCLEGTLAPELAKLIHIKSIILRNNSFSGTIPEGFVELKELEVLDLGYNNFSGHIPADLGSNISLAILLLDNNEFLVGFSPEINELRLLSECQVGENQLTSAAKMPACIERATTWHIGQGKGTTRGLLQLRKSFHRTHEDPRNRAANPPQEKPSLPSPPSPVPKLTPSEKNASNSPTPHSTPGSGALPKTEKSTSPKVHILVGVIGGAVFLLFSTIGLYICKTKVVNVRPWATGLSGQLEKAFVTGAQKLRRLNLEVACEDFSNVIGTSPIGTVYKGTLSSGVEIAVISVPVTSSKNWSKTLEVQFRNKIDTLSKVNHKNFVNLIGYCEEEEPFTRMLVFEYAPNGTLFEHLHIKEAEHLDWVTRLRVATGMAYCLQHMHQLDPPMALIKLNSQTVYLTDDYAAKLSDFSFSYEITSAETKAIDMPKASLETNVYSFGALLFEIVTGRLPYSVEQRDSLENWASHYIQGDQPLKDMVDPILESYQEGQLEQVAALIKSCVHPDPKQRPIMKDVSEKLREITKITPESAVPKLSPLWWAELEIASTEVR* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0569 637 PANTHER LRR RECEPTOR-LIKE KINASE 1 633 - -
Vra6g0569 637 Gene3D Phosphorylase Kinase; domain 1 326 431 - -
Vra6g0569 637 SUPERFAMILY Protein kinase-like (PK-like) 337 606 IPR011009 -
Vra6g0569 637 Pfam Protein tyrosine and serine/threonine kinase 352 606 IPR001245 GO:0004672|GO:0006468
Vra6g0569 637 SUPERFAMILY L domain-like 37 191 - -
Vra6g0569 637 Pfam Leucine rich repeat N-terminal domain 36 78 IPR013210 -
Vra6g0569 637 Gene3D Transferase(Phosphotransferase) domain 1 432 618 - -
Vra6g0569 637 Gene3D Ribonuclease Inhibitor 33 206 IPR032675 -
Vra6g0569 637 MobiDBLite consensus disorder prediction 240 254 - -
Vra6g0569 637 ProSiteProfiles Protein kinase domain profile. 349 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0569 637 MobiDBLite consensus disorder prediction 225 281 - -
Vra6g0569 637 PANTHER PROTEIN MALE DISCOVERER 2 1 633 - -
Vra6g0569 637 MobiDBLite consensus disorder prediction 255 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0569 Vra-Chr6 4987132 4991212 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0569 23 606 Receptor kinase-like Gene Family AT5G16000 27.432 1.72e-48 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vra6g0569 PK_Tyr_Ser-Thr 3.1e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0569 - - gmx:100792450 1011.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0569 6 4987132 4991212 Vra6g0569 6 4987132 4991212 ECH
Vra2g1552 2 23419225 23423879 Vra6g0569 6 4987132 4991212 PCT