Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0568 ATGGGTCTTCGTTCCTCTTCACTCAACCGCCCTCACTATCCAGGTTCATCAGACATTCACGGCAGCAACGTTGAGTTTTCCGTGAGAGAAGGCATAGACAGCGAATGCTCTCCTCTTCTTTTTCCCGGTGGCCAAATTCTGAAATGGCCAGAGTTGAAGGTGTTCAGTTTTAAGGAGCTGAAATCTGCCACAGAGAATTTTAAATCTGCCAGATTGGTCGGTGAAGGTAGGTTTGGCATAGTTTACAAAGGATGGTTGGATGAGAAGACCCTCACCCCCGCCAAACCAGGATCTGGAGTTGGAGTTGCCATCAAAATGTTCAACACGGAAGGAACTCGAGGGTTTTTACTGTGCCAGTCTGAGATAAACGTTTTAGGAAGGCTTTCTCACCCCAACGTGGTCAGGCTATTGGGGTACTGTCGGGAAGAGGATCAGTTTCTTCTTGTGTATGAGTTCATGCCGAAGGGAAGCCTCGAGTGTCATCTCTTCCAAAAAAATCATGACATGGAACCACTTTCGTGGAACACCCGGCTTAAAATTGTTATCGGTGCAGCTCGGGGATTAGCTTTCTTGCATGCCAACGAAAATAAGGTCATGTTCAGAGATTTCAACACCTCAAATATACTGCTCGACGGGAATTACAATGCAAAAATAGCAGACTTTTGGTTGGCTGAAGGGCTTCCAGGGGAACAATCACGTGTAAGTAGCAGTGTCATCATTGGTTATGTTGCACCAGAATATACCGCAACAGGGCAGTTGCATGTGGAGAGTGATGTGTATGGATTTGGTGTGGTGCTTCTTGAAATACTTACAGGCATGAGGGTATTGGACTTTACAAGGCCACTAGGGCAGCAGCAACTGGTTGAATGGACAAAAACTTGTCTCTCTTCCAAAGAGAAGTGGAAAAACATTATTGATGATAGGATAAAGGATTGA 936 0.4551 MGLRSSSLNRPHYPGSSDIHGSNVEFSVREGIDSECSPLLFPGGQILKWPELKVFSFKELKSATENFKSARLVGEGRFGIVYKGWLDEKTLTPAKPGSGVGVAIKMFNTEGTRGFLLCQSEINVLGRLSHPNVVRLLGYCREEDQFLLVYEFMPKGSLECHLFQKNHDMEPLSWNTRLKIVIGAARGLAFLHANENKVMFRDFNTSNILLDGNYNAKIADFWLAEGLPGEQSRVSSSVIIGYVAPEYTATGQLHVESDVYGFGVVLLEILTGMRVLDFTRPLGQQQLVEWTKTCLSSKEKWKNIIDDRIKD* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0568 311 Pfam Protein tyrosine and serine/threonine kinase 70 272 IPR001245 GO:0004672|GO:0006468
Vra6g0568 311 SUPERFAMILY Protein kinase-like (PK-like) 48 293 IPR011009 -
Vra6g0568 311 ProSiteProfiles Protein kinase domain profile. 67 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0568 311 Gene3D Phosphorylase Kinase; domain 1 44 152 - -
Vra6g0568 311 Gene3D Transferase(Phosphotransferase) domain 1 153 311 - -
Vra6g0568 311 PANTHER SERINE/THREONINE-KINASE CX32, RELATED PROTEIN 23 310 - -
Vra6g0568 311 PANTHER OS01G0588500 PROTEIN-RELATED 23 310 - -
Vra6g0568 311 ProSitePatterns Protein kinases ATP-binding region signature. 73 105 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0568 Vra-Chr6 4979991 4982456 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0568 53 306 Glycoside Hydrolase AT3G07070 47.674 1.46e-71 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vra6g0568 PK_Tyr_Ser-Thr 8.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0568 - - vra:106765952 461.07