Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0559 ATGGGTGGAAATTCTCCTTGTGCCTCATGCAAATTGTTGAGACGCAGGTGTACAAAAGATTGCATCTTTGCTCCTTATTTTCCTTCGGACGAACCTCAAAAGTTTGCCATAGTTCACAAAGTTTTTGGTGCTAGCAATGTCAGCAAAATGTTGCAGGAACTTCCAGTTCAGCAGAGAGCAGATGCAGTGAGTAGTTTAGTGTATGAAGCAAGTGCAAGAGTAAGAGATCCTGTGTATGGTTGCGTTGGAGCCATATCCTATTTGCAAAATCAAGTAGCTGATCTTCAAATGCAACTTGCAGTTGCTCAAGCAGAGATACTCTGTATTCAGATGGAAAATGAATCACTGATACCATTCTCAGAAACTGATCTGCACCAGAAGTCTTATCTTCTTCAGAATAATTTCTCTCAGTTACTTGATTTTAACACTTCCAACAGTGTAGTTCACTATTCTCCTAATCATCTTACACAATGA 474 0.3966 MGGNSPCASCKLLRRRCTKDCIFAPYFPSDEPQKFAIVHKVFGASNVSKMLQELPVQQRADAVSSLVYEASARVRDPVYGCVGAISYLQNQVADLQMQLAVAQAEILCIQMENESLIPFSETDLHQKSYLLQNNFSQLLDFNTSNSVVHYSPNHLTQ* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0559 157 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Vra6g0559 157 Coils Coil 85 105 - -
Vra6g0559 157 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Vra6g0559 157 PANTHER LATERAL ORGAN BOUNDARIES (LOB) DOMAIN PROTEIN 1 144 - -
Vra6g0559 157 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0559 Vra-Chr6 4889756 4890791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0559 3 114 AS2 family AT2G30130 89.286 5.93e-72 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vra6g0559 LOB 9.8e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0559 - - gmx:100812780 251.906
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0559 6 4889756 4890791 Vra6g0559 6 4889756 4890791 ECH
Vra2g1547 2 23384313 23385331 Vra6g0559 6 4889756 4890791 PCT