Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0555 ATGGTGAACAGAAAAAGACGGTTAGATCAAATCAAGCATCCATTCAATTCTCACCCCTTTGAAGCCGTTGCCTTTGGATCATGGCAAGCTGTGGAGTTCATAAAGATTAAGGCAGGAACTATGTCTATACATTTTGTAGATAATCATTATGTTACTATGGAGAAAGGACCCTTGTCAGACATTCGGATAAGGTCAAGGAAAGCTACTTTATCTGATTGCTCCCGTTTTCTGCGACCTGGAATTGACATATGTGTGCTATCTGCCCCTCAACAATCTAATGATTCAGATGCAGTTGTTATGGACCCTGTTTGGTTGGATGCTAAAATAAGCTCTGTACAAAGAAAACCTCATGACTCTGAGTGCTCCTGTCAGTTTTATGTCAATTTCTATGTTCATCAAGGTTCACTTGGTGCAGAGTTAAGAACTCTGAGCAAGGAGATTAAAGTTGTTGGAATCAAACAAATATCCATTCTCCAAAAACTTGACAATATTGCTTGTGAAGATCAGCACTATCGGTGGGCATCATCTGAGGACTGTTCCATGATATCACATACTAAATTACTTTTGGGCAAAGTGTTATGTGATCTTTCATGGTTAGTTGTTACCTCTGCTTTAAAGAAGATTTCCTTTTGTCTAAGATGTCTAGAAGAAAAGCTAGTGTATCAAATTTTGGGAAGAGACAGTGATAACAGTTCATTGAATAGAGATTTTCACATTGATGTTGTGAATTTCAAAACAGAAAGTGGCTCGATAATACCCTTTGTTTCTCAAGTAGCTACACCTATAACTAAGATGATTGATCACGTACAGGAATCCCATGAAGATAAATTATTGCTATCTTATGATGTTGAGGGCTTGCGGCGTTCTAAGCGTAGGAATGTACAACCAGAACGTTACATTGGTAGTGTTAATGTTTCTTCTGAGATTGATGTTGGTTCTTTCAGAAACAGACCACCAGTGAAGATAGACACATGGAAAGAAGAGGAGGATGAAGAACTGCATATACCATTAGCATGCCTGTTTGGTTTGCAGAAGAGCACTCCAGAAGGGGTTAATGAAAATCATCAAAAGGAGGCAAGCACCTGCCGGGAGCTTGTGATGCATAAGAGGAGAATGACTGCTAAGCAGAAGGTAAAGTCAGGAGAAAATTATCATAATGAAGATCAAAATCGTCTTGCTATTGTTCCTCTTCCCGATCAAGATGATCCATTACTTGTTGAGCATTGTGATGATTTCGATGAAAAGGTTGCTAGAAGTTATCGTCATGAATCCTCTGAACATTATTCCAAATATTATGATCTAACTAGTACTCCCAATAAATCGAAGAAGAAAGGTGATAAATTGTTAGCTTTTGAGAATAATAATCATCCTGCTAAGTCAGATGATGTAGAAAAGACTGATGATGATTTGTCATTGAGATATCATTATAGTTATGGTGTCCCAAAGTCAAAGAGGAAGAATTTAAGTGGTTTAGATGATATAGTAGATCTTGGAAATAAATGGGAAGGGATTAGATCCAACAAAGAAGTTCAAAAGAAAAAATACCATGCATCTTATTCAAGAAGTAGAGATCATGGAGAAGAAAAAAGGTACAAATATAAAGACAGAACCTTAAATGCAGCTGCCTACAAGGATTTGATAAATTCGTACTTAAAGAATATTAATACAATATCTACTCAAGAAGAACCATCTATCACTGATCAGTGGAAGGAAAACAATACAACTAGTAGCATTGGGCAAAAGACAGAAACAGAAATGCCTGATGAAGAGGATGCAGAAGAAGTATCTGAAATGGATATGTTGTGGAGAGAACTGGAAGTGTCATTGGCATCATGCTATCTAGAAGAGGATTCAAATGCTGCTACTGTCACTGAGACTGTGGAAATCGCGAACCGAGGCTGCCCACATGATTTCAGAATGAATGAGGAAATTGGAATTTACTGCTATAGATGTGGCTTTGTGAAAACTGAGATCAAATATATTACGCCACCCTTTATTCAACATTCTTCATGGCACCAAGAGGAGAGGCACAGTGCTGAAGAAGATTCACGAACAAAGGTTGATGAGGATGATGACTTGGATCTTTTCCCTGCCCTAGAATCTCCTGAGGGACCTGTGTCTCAAGAAAATGATAACGTTTGGGCATTGATTCCCGAACTTAGAACAAAGTTGCATGCTCATCAGAAGAAAGCCTTTGAGTTTCTTTGGCAAAACATTGCAGGGTCAATGGAACCCAGACTCATGGAAGCAGCATCCAAAAGAATAGGTGGCTGTGTGGTATCTCATACTCCTGGTGCTGGAAAAACTTTTCTCATCATTGCTTTTCTTGTGAGCTACTTGAAGTTATTCCCAGGGAAGAGACCTCTTGTTCTTGCTCCAAAAACAACCCTCTATACTTGGTACAAAGAATTTATCAAGTGGGATATTCCTATACCAGTGTATCTGATTCATGGACGTAGAACATACCGGGTATTCAAGCAGAAATCACCGGTTGTTCTTCCTGGAGTTCCCAAGCCCACTGATGATGTCAAGCATGTTTTGGATTGCCTTGAGAAGATACAAAAATGGCATTCACACCCGAGTGTTCTGATAATGGGTTATACTTCATTTTTAACATTGATGCGTGAGGATTCAAAGTTTGCACACAGAAAATACATGGCCAAAGTGCTGAGGGAAAGCCCGGGGATCTTGGTTCTGGATGAAGGGCATAACCCCAGAAGCACTAAATCAAGGTTGAGAAAGGCTCTGATGAAAGTTCAAACAAAATTGAGAATACTGCTTTCTGGTACATTGTTTCAGAACAATTTCTGTGAATACTTCAACACTCTGTGCTTGGCAAGACCAAAGTTCATTCATGAAGTACTGAAAGCATTAGACTCCAAATACAAAAGGAAAGGAAAAGTGGCGAAAAAGGCAAGTCATTTATTAGAGTCACGGGCCAGAAAATTCTTCTTAGACAAAATTGCTAAGAAGATTGACTCTGATAAAGGTAGGGAGAGGCAGCAGGGTCTAAAGATGTTGAGAAATGTAACAAATGGATTCATAGATGTTTATGAAGGTGGGAGCTCTGACGGTCTACCTGGTTTACAAATTTATACACTGTTAATGAATTCAACAGATACACAGCATGAAATTTTGCTTAAACTACACAAGAAAATGGCGAAGTGCAATGGTTACCCTCTGGAGTTAGAGCTTATGATAACTCTTGGTTCAATACATCCCTGGCTGGTGAAAACAGCAGTGTGTGCTGAGAAGTTTTTCACTTCTGAGCAATTGATGGAGCTAGAAAAATGCAAATTTGACCTGAAAATAGGGTCGAAGGTAAGATTTGTTTTGAGCCTTATCTACCGTGTTGTGAAAAACGAGAAGGTTCTGATATTTTGCCACAACATTGCACCAGTGAAGCTATTTGTGGAATATTTTGAGAAGTATTTTGGATGGCTAAGAGGTAGAGAAGTGTTGGTACTAACTGGGGAATTAGAACTGTTTGAAAGAGGGAGAGTAATGGACAAGTTTGAGGAAGCTGGTGGAGTAGCAAAAGTACTTATTGCTTCTATTACAGCTTGTGCTGAAGGCATTAGTTTGACAGCAGCTTCACGAGTTATTATGTTGGATTCAGAGTGGAATCCTTCAAAAACGAAGCAAGCCATTGCTCGGGCATTTCGGCCTGGTCAGCAGAAAGTTGTTTATGTGTATCAGCTTTTAGTCACAGGTTCATTGGAGGAAGATAAGTACAGAAGAACCACTTGGAAAGAATGGGTTTCAAGCATGATCTTCAGTGAGGCCTTTGTGGAAGACCCTTCTCAGTGGCAAGCTGAGAAGATTGAAGATGATATACTCAGAGAAATGGTTGCTGAAGATAGTTCTAAATCATTCCACATGATCATGAAGAATGAAAAAGCTTCTTCTACCAACAAATAA 3921 0.3907 MVNRKRRLDQIKHPFNSHPFEAVAFGSWQAVEFIKIKAGTMSIHFVDNHYVTMEKGPLSDIRIRSRKATLSDCSRFLRPGIDICVLSAPQQSNDSDAVVMDPVWLDAKISSVQRKPHDSECSCQFYVNFYVHQGSLGAELRTLSKEIKVVGIKQISILQKLDNIACEDQHYRWASSEDCSMISHTKLLLGKVLCDLSWLVVTSALKKISFCLRCLEEKLVYQILGRDSDNSSLNRDFHIDVVNFKTESGSIIPFVSQVATPITKMIDHVQESHEDKLLLSYDVEGLRRSKRRNVQPERYIGSVNVSSEIDVGSFRNRPPVKIDTWKEEEDEELHIPLACLFGLQKSTPEGVNENHQKEASTCRELVMHKRRMTAKQKVKSGENYHNEDQNRLAIVPLPDQDDPLLVEHCDDFDEKVARSYRHESSEHYSKYYDLTSTPNKSKKKGDKLLAFENNNHPAKSDDVEKTDDDLSLRYHYSYGVPKSKRKNLSGLDDIVDLGNKWEGIRSNKEVQKKKYHASYSRSRDHGEEKRYKYKDRTLNAAAYKDLINSYLKNINTISTQEEPSITDQWKENNTTSSIGQKTETEMPDEEDAEEVSEMDMLWRELEVSLASCYLEEDSNAATVTETVEIANRGCPHDFRMNEEIGIYCYRCGFVKTEIKYITPPFIQHSSWHQEERHSAEEDSRTKVDEDDDLDLFPALESPEGPVSQENDNVWALIPELRTKLHAHQKKAFEFLWQNIAGSMEPRLMEAASKRIGGCVVSHTPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWDIPIPVYLIHGRRTYRVFKQKSPVVLPGVPKPTDDVKHVLDCLEKIQKWHSHPSVLIMGYTSFLTLMREDSKFAHRKYMAKVLRESPGILVLDEGHNPRSTKSRLRKALMKVQTKLRILLSGTLFQNNFCEYFNTLCLARPKFIHEVLKALDSKYKRKGKVAKKASHLLESRARKFFLDKIAKKIDSDKGRERQQGLKMLRNVTNGFIDVYEGGSSDGLPGLQIYTLLMNSTDTQHEILLKLHKKMAKCNGYPLELELMITLGSIHPWLVKTAVCAEKFFTSEQLMELEKCKFDLKIGSKVRFVLSLIYRVVKNEKVLIFCHNIAPVKLFVEYFEKYFGWLRGREVLVLTGELELFERGRVMDKFEEAGGVAKVLIASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLVTGSLEEDKYRRTTWKEWVSSMIFSEAFVEDPSQWQAEKIEDDILREMVAEDSSKSFHMIMKNEKASSTNK* 1307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0555 1306 Gene3D - 1080 1298 IPR027417 -
Vra6g0555 1306 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 20 1301 - -
Vra6g0555 1306 CDD SF2_C_SNF 1099 1235 - -
Vra6g0555 1306 MobiDBLite consensus disorder prediction 562 582 - -
Vra6g0555 1306 Pfam Helicase conserved C-terminal domain 1107 1223 IPR001650 -
Vra6g0555 1306 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 20 1301 IPR044567 GO:0080188
Vra6g0555 1306 Pfam SNF2-related domain 733 992 IPR000330 GO:0005524|GO:0140658
Vra6g0555 1306 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 894 1262 IPR027417 -
Vra6g0555 1306 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 749 949 IPR014001 -
Vra6g0555 1306 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 676 959 IPR027417 -
Vra6g0555 1306 SMART helicmild6 1139 1224 IPR001650 -
Vra6g0555 1306 MobiDBLite consensus disorder prediction 562 591 - -
Vra6g0555 1306 Gene3D - 703 991 IPR038718 -
Vra6g0555 1306 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1110 1271 IPR001650 -
Vra6g0555 1306 SMART ultradead3 720 954 IPR014001 -
Vra6g0555 1306 MobiDBLite consensus disorder prediction 512 531 - -
Vra6g0555 1306 CDD DEXHc_ATRX-like 724 964 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0555 Vra-Chr6 4836911 4843695 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0555 1149 1242 RAD5 or RAD16-like Gene Family AT5G43530 38.298 6.46e-11 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vra6g0555 SNF2_N 3.8e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0555 K10875 - gmx:100811703 2161.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0555 6 4836911 4843695 Vra6g0555 6 4836911 4843695 ECH