Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0554 ATGGGTGCTTATGATCAAGTTTCTGTGCGGCCTTTGGATTCTTCTAGAAAGAGGAAAAGTAGGAGCAGAGGGGATGGTTCTAGATCTGTGGCTGAGACCATTGCAAAGTGGAAGGAATACAATGAGCATCTTTATTCTGGCAAAGATGATGGTAGATCAACTCGGAAGGCACCAGCTAAAGGGTCAAAGAAAGGATGCATGAAAGGGAAAGGAGGACCCCAGAACTATGAGTGTAACTACAGAGGAGTTAGGCAGAGAACTTGGGGGAAATGGGTGGGTGAGATTAGGGAGCCAAATAGAGGGAGTAGGCTTTGGTTAGGAACCTTTTCTACTGCCCAAGAAGCTGCTCTTGCTTATGATGAAGCTGCTAGAGCCATGTATGGTCCATGTGCACGCCTCAACTTCCCCCACATCTCAGATTATGCTTCTGTCAAGGAATCGTTTAAGGACTCTTTCTTGGCTGCTTCATCTTCATGTTCTTCGACAACATCGGACACTACTACTACTACCACTACATCCAATCGATCAGAGGTCTGTGCAGCTGAGGATGCTAAGGAGAATATTCTTCCTGCCCTTGATAAGGCCAACCGTAATGTTTGTCACAAGGGTTATGAACATGCCTCACCAACTAGCAGAATGAAGCTAGAGCCGAAGGATGAGGCTGTGGATCGCCTAGACCCGGGGGCTGGAGAAGGAATACATCATGCTGAGCAGGCAGAGGATGTAAATGAAGACCAGATGGACTTTTCGTGGATTGATGCTTTGGATTTTAATAATGATGATTACTCCAAAAGCTTTTCCAATGATGAGTTATTTCAGGTGGATGAACTTTTGGGGCTAATAGATAATAACCCAGTTGATGACTCTGGGTTGATGCAAGGTTTGGATTTTGGACAAACAGGATTTCCTGGAGACAGTAATCCTCAGCTTGATAATACGTCATCAAGCTTTGTTTATCAGTTGCAAAATCCAGATGCCAAGTTGCTGGGAAGTTTACCCCATATGGAACAGACACCATCTGGTTTTGATTATGGATTAGATTTCCTGAAAACAGTTGTGCCAGAGGACTATAATGGTGTAGGGGAAGAACCGCAATTTCTTAACTTGGACGATGTTCTGAACCATGATTCAAAGGAAATGCTAGCAAGCAAGGAATGA 1158 0.4439 MGAYDQVSVRPLDSSRKRKSRSRGDGSRSVAETIAKWKEYNEHLYSGKDDGRSTRKAPAKGSKKGCMKGKGGPQNYECNYRGVRQRTWGKWVGEIREPNRGSRLWLGTFSTAQEAALAYDEAARAMYGPCARLNFPHISDYASVKESFKDSFLAASSSCSSTTSDTTTTTTTSNRSEVCAAEDAKENILPALDKANRNVCHKGYEHASPTSRMKLEPKDEAVDRLDPGAGEGIHHAEQAEDVNEDQMDFSWIDALDFNNDDYSKSFSNDELFQVDELLGLIDNNPVDDSGLMQGLDFGQTGFPGDSNPQLDNTSSSFVYQLQNPDAKLLGSLPHMEQTPSGFDYGLDFLKTVVPEDYNGVGEEPQFLNLDDVLNHDSKEMLASKE* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0554 385 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 11 356 - -
Vra6g0554 385 MobiDBLite consensus disorder prediction 45 70 - -
Vra6g0554 385 Pfam AP2 domain 78 128 IPR001471 GO:0003700|GO:0006355
Vra6g0554 385 MobiDBLite consensus disorder prediction 1 31 - -
Vra6g0554 385 CDD AP2 78 137 IPR001471 GO:0003700|GO:0006355
Vra6g0554 385 Gene3D AP2/ERF domain 79 138 IPR036955 GO:0003700|GO:0006355
Vra6g0554 385 MobiDBLite consensus disorder prediction 11 26 - -
Vra6g0554 385 ProSiteProfiles AP2/ERF domain profile. 79 136 IPR001471 GO:0003700|GO:0006355
Vra6g0554 385 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Vra6g0554 385 PRINTS Ethylene responsive element binding protein signature 102 118 IPR001471 GO:0003700|GO:0006355
Vra6g0554 385 SMART rav1_2 79 142 IPR001471 GO:0003700|GO:0006355
Vra6g0554 385 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 11 356 - -
Vra6g0554 385 SUPERFAMILY DNA-binding domain 79 137 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0554 Vra-Chr6 4817226 4819563 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0554 16 370 AP2-EREBP Transcription Factor Family AT2G40340 40.166 6.04e-70 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra6g0554 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0554 - K09286 gmx:100800134 567.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0554 6 4817226 4819563 Vra6g0554 6 4817226 4819563 ECH