Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0551 ATGGGGACCGAGAACCTCACCTCAAATAAGCATTTTCAAAATGGGGTGAGGAATGTGGGAAATGCTCATTTTTTGCGCTTGTTTTTCCTTTTGTGGTTTATTGTGGTGGCAGTGTTTGGTGAAGAGCGTTGGGATGGGGTTGTTGTCACACAGTCGAACTTCCTGGCACTTGAGGCATTCAAGCAAGAGTTGGTTGATCCCGAAGGCTTCCTCAGAAGCTGGAATGACAGTGGCTATGGAGCTTGTTCTGGAGGTTGGGTTGGTATCAAGTGTGCCCAGGGACAGGTTATTGTGATTCAGCTTCCATGGAAAGGGTTGAAGGGGCGTATCACCGAGAGGATTGGCCAACTTCAAGGGCTAAGAAAGCTTAGTCTCCACGATAACCAAATCGGTGGTTCGATCCCTTCATCACTGGGAGTTCTTCTCAATCTGAGAGGGGTTCAACTCTTCAACAATAGGTTCACAGGCTCTCTCCCTCCTTCATTAGGTTCATGTCCTTTGCTTCAGTCTTTAGACCTCAGTAACAATCTGCTCAGCGGGACAATCCCGATCAGCCTTGGGAATGCCACTAAGCTTTATTGGCTTAACTTGAGCTTTAATTCCTTCTCTGGCCCAATACCAACTACCTTAACTCGCTTAACTTCTCTCACTTACATATCTCTTCAACACAACAATCTCTCGGGTTCTATTCCTAATTCGTGGGGTGGTAGCTTGAGGAACCACGTCTTTCGCCTCCAAAATCTGATCCTAGATTATAACTTCTTGAGTGGCACCATTCCTGCTTCTTTGGGCAACTTGAGTGAACTCACAGATATTTCTCTCAGTCATAACCAGCTTACAGGACCTATCCCAAATGAAATAGGAAGCCTTTATAGACTTAAGACGGTAGATTTTTCTAGTAATGCATTGAACGGAAGCTTGCCCGCCACTCTCTCTAATGTGTCCTCTCTCACTCTCTTGAATGTAGAGAACAACCACCTAGGTAATCAAATCCCAGAAGCCTTGGGCAGATTGCACAATCTATCTGTTCTAGTTCTTAGCAGAAACCAATTCAGTGGCCATATTCCTCAGAGTATTGGAAACATGTCAAAGCTTACACAGCTTGATTTGTCAATGAATAATCTCGGTGGAGAAATTCCAGCATCCTTTGAAGATCTGAGTGGTCTTGATTTCTTCAACGTTTCTCATAACAACCTCTCTGGTCCGGTTCCAGCCCTACTTGGGCATAAATTTAATTCAAGCTCATTTGTGGGAAATATTCAACTGTGTGGATATAGCCCTTCCACCCCATGTCCCTCGTCAGCTCCTTTTGGTTCACCTAAAGAAATATCAGAAAACCGTCGACACAAGAAACTAGGCACCAAAGACATAATTCTCATAGTAGCAGGAGTGCTCCTTGTTGTACTGGTAACACTTTGCTGCATTCTGCTATTCTGCCTGATCAGAAAAAGAACAGCATCAAATGCAGAGGGTGGCCAGGCCACAGGGAGAGCATCTGCATCTGCTGCCACGACAGAAAAAGGAGTCCCTCCTGTCGCAGGTGAAGCTGAAGCTGGTGGTGGTGAGGCCGGAGGTAAACTAGTCCACTTTGATGGACCATTGGCTTTTACAGCTGATGATCTCTTGTGTGCAACAGCGGAGATAATGGGAAAGAGTACGTATGGAACTGTTTACAAGGCTACATTAGAGGATGGAAGTCAAGCTGCAGTTAAACGATTGAGGGAAAAGATCACGAAAGGTCAGAGAGAATTCGAATTTGAAGTTAGTATTATAGGAAGAATTCGACACCCAAATCTTCTGGCATTGAGAGCCTATTACTTGGGACCCAAAGGAGAAAAGCTTCTAGTATTTGATTACATGCCTAAGGGAAGTCTTGCTTCTTTCCTACACGCTCGTGGGCCCGAAACAGCCATTGATTGGCCAACAAGGATGAAAATAGCGCAGGGAATGGGTCGTGGCTTGTTATACCTTCATTCCAATGAAAACATTATTCACGGAAACCTTACGTCCAGCAATGTGGTGCTGGATGAGAATACGAATGCTAAAATAGCTGATTTTGGCCTTTCTCGGTTGATGACAACTGCTGCTAATTCTAACGTGATTGCCACTGCTGGGGCATTGGGATACCGAGCACCTGAGCTCTCGAAGCTTAAGAAAGCCAACACAAAAACTGATGTATACAGTCTTGGTGTCATCTTGTTAGAACTCCTAACGGGGAAGCCACCTGGTGAGGCTTTGAATGGCGTGGATTTACCTCAGTGGGTTGCCTCCATTGTCAAAGAGGAGTGGACAAATGAAGTTTTCGATGTAGAGTTGATGAGAGATGCTTCAACATACGGCGACGAAATGCTGAACACGTTGAAGCTTGCTTTGCACTGTGTTGATCCTTCTCCATCAGCACGACCAGAAGTCCAGCAAGTCCTTCAGCAGCTTGAAGAGATTAGACCGGAGATATCAGCCAGTTCGGGTGACGATGGAGCCATCCCTTCCACCAGTGAATGA 2502 0.4552 MGTENLTSNKHFQNGVRNVGNAHFLRLFFLLWFIVVAVFGEERWDGVVVTQSNFLALEAFKQELVDPEGFLRSWNDSGYGACSGGWVGIKCAQGQVIVIQLPWKGLKGRITERIGQLQGLRKLSLHDNQIGGSIPSSLGVLLNLRGVQLFNNRFTGSLPPSLGSCPLLQSLDLSNNLLSGTIPISLGNATKLYWLNLSFNSFSGPIPTTLTRLTSLTYISLQHNNLSGSIPNSWGGSLRNHVFRLQNLILDYNFLSGTIPASLGNLSELTDISLSHNQLTGPIPNEIGSLYRLKTVDFSSNALNGSLPATLSNVSSLTLLNVENNHLGNQIPEALGRLHNLSVLVLSRNQFSGHIPQSIGNMSKLTQLDLSMNNLGGEIPASFEDLSGLDFFNVSHNNLSGPVPALLGHKFNSSSFVGNIQLCGYSPSTPCPSSAPFGSPKEISENRRHKKLGTKDIILIVAGVLLVVLVTLCCILLFCLIRKRTASNAEGGQATGRASASAATTEKGVPPVAGEAEAGGGEAGGKLVHFDGPLAFTADDLLCATAEIMGKSTYGTVYKATLEDGSQAAVKRLREKITKGQREFEFEVSIIGRIRHPNLLALRAYYLGPKGEKLLVFDYMPKGSLASFLHARGPETAIDWPTRMKIAQGMGRGLLYLHSNENIIHGNLTSSNVVLDENTNAKIADFGLSRLMTTAANSNVIATAGALGYRAPELSKLKKANTKTDVYSLGVILLELLTGKPPGEALNGVDLPQWVASIVKEEWTNEVFDVELMRDASTYGDEMLNTLKLALHCVDPSPSARPEVQQVLQQLEEIRPEISASSGDDGAIPSTSE* 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0551 833 CDD STKc_IRAK 549 814 - -
Vra6g0551 833 PRINTS Leucine-rich repeat signature 168 181 - -
Vra6g0551 833 PRINTS Leucine-rich repeat signature 362 375 - -
Vra6g0551 833 Pfam Leucine rich repeat 340 399 IPR001611 GO:0005515
Vra6g0551 833 SMART LRR_typ_2 213 236 IPR003591 -
Vra6g0551 833 SMART LRR_typ_2 362 385 IPR003591 -
Vra6g0551 833 SMART LRR_typ_2 266 290 IPR003591 -
Vra6g0551 833 SMART LRR_typ_2 314 338 IPR003591 -
Vra6g0551 833 SMART LRR_typ_2 117 141 IPR003591 -
Vra6g0551 833 Pfam Leucine rich repeat N-terminal domain 55 91 IPR013210 -
Vra6g0551 833 Gene3D Transferase(Phosphotransferase) domain 1 621 825 - -
Vra6g0551 833 Gene3D Phosphorylase Kinase; domain 1 549 620 - -
Vra6g0551 833 Pfam Protein tyrosine and serine/threonine kinase 546 811 IPR001245 GO:0004672|GO:0006468
Vra6g0551 833 MobiDBLite consensus disorder prediction 814 833 - -
Vra6g0551 833 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 22 821 - -
Vra6g0551 833 Gene3D Ribonuclease Inhibitor 50 239 IPR032675 -
Vra6g0551 833 ProSiteProfiles Protein kinase domain profile. 543 818 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra6g0551 833 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 22 821 - -
Vra6g0551 833 SUPERFAMILY Protein kinase-like (PK-like) 547 815 IPR011009 -
Vra6g0551 833 MobiDBLite consensus disorder prediction 491 520 - -
Vra6g0551 833 SUPERFAMILY L domain-like 90 425 - -
Vra6g0551 833 Gene3D Ribonuclease Inhibitor 240 436 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0551 Vra-Chr6 4787320 4790686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0551 44 816 Receptor kinase-like Gene Family AT3G51740 64.313 0.0 952
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vra6g0551 PK_Tyr_Ser-Thr 5.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0551 - - gmx:100783979 1352.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0551 6 4787320 4790686 Vra6g0551 6 4787320 4790686 ECH
Vra2g1540 2 23304980 23308414 Vra6g0551 6 4787320 4790686 PCT