Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0550 ATGGTTATTCTTGCAGTTGACACGTGGCATGGGACTTCCATAATGCTTGGTAGGGATATAGAATCAAATCGAGTAACAATAGTTTTGGAGAACTCAATGACTACTGCAGCCAAGGAATACTTCTTTAAAATCTTCTCCCCAGAAAAACACTCTGAAACAATGGTTATTCCAAGTTGTTTTGTGAAGTCTAGAGGTTTAGGAAGAAGGGCAATCCCTAAAGATATTATCCTCAGAAATGTTAGTGGTAGGGTTTGGTGTGTTAAAACTCGTCTTGTTGGACAGAAAATGTACTTTGGAGAGGGTTGGAAGGTTTTTCAAGAAGAAAACTGTATAAGAAAAGCAGATTTTATGCTTTTCAAGTATGATGGGACCAATGTATTTAAGGTGGTAATTCTTGAACAATCATCACGGTGTGAAAGGAGAGAAGTTGAAGAAGATGAGGTGATAGACATCACCGGAGAGGAAGAGAATGAAAACTCTGAAGACTATATGATGGAAGACGAGGAAGACATTGATGATGAGGATGAGTACTACCACGATGACAATTATACAGAAATAGAAGAAGAGAGTGAAGAAGAACACGTGAGGAGTAAAAGTCATCATAGTAGAGCCAGTAATAGGGATGCTGAAGATCCTCATCTTGAAGACTATGAATTTGATCCACAAATGTATATTCAGCATGAAAATCCATACTTTGAAGCAAAACTATATAAAAATAGACCCAATGAATTGCATGTTCCAGCAAATATTCTCAGAGACAGGTCCCTTACTTTTCCAGAAAAGATCACTCTTTCACGTTGCCGATGCTTCCAAAGTGAGGACACTCAAAGAAAGGAATTACGAAACAATCATTGTGGCTTCTCACGACAGACACAGATGTATTCGAAAGTAACAAAAGTGTCTGAGTGGCAAGATGGTCGAGTATGTATTAAAGGGTGGACAAGTTTTTGTACAAAGAACAAGATCAAAGAACATGATGTATGCATATGTGAAATTGTATTGGGAAAAGACAAGATAGTAAGAACAATTCAGGTGCATGTGCTTGGTGCTAGAAACGGATGA 1062 0.3795 MVILAVDTWHGTSIMLGRDIESNRVTIVLENSMTTAAKEYFFKIFSPEKHSETMVIPSCFVKSRGLGRRAIPKDIILRNVSGRVWCVKTRLVGQKMYFGEGWKVFQEENCIRKADFMLFKYDGTNVFKVVILEQSSRCERREVEEDEVIDITGEEENENSEDYMMEDEEDIDDEDEYYHDDNYTEIEEESEEEHVRSKSHHSRASNRDAEDPHLEDYEFDPQMYIQHENPYFEAKLYKNRPNELHVPANILRDRSLTFPEKITLSRCRCFQSEDTQRKELRNNHCGFSRQTQMYSKVTKVSEWQDGRVCIKGWTSFCTKNKIKEHDVCICEIVLGKDKIVRTIQVHVLGARNG* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0550 353 PANTHER B3 DOMAIN-CONTAINING PROTEIN LOC_OS12G40080 34 347 - -
Vra6g0550 353 ProSiteProfiles B3 DNA-binding domain profile. 39 135 IPR003340 GO:0003677
Vra6g0550 353 SUPERFAMILY DNA-binding pseudobarrel domain 226 348 IPR015300 -
Vra6g0550 353 Pfam B3 DNA binding domain 41 131 IPR003340 GO:0003677
Vra6g0550 353 Gene3D - 217 351 IPR015300 -
Vra6g0550 353 MobiDBLite consensus disorder prediction 189 212 - -
Vra6g0550 353 Gene3D - 31 138 IPR015300 -
Vra6g0550 353 MobiDBLite consensus disorder prediction 186 212 - -
Vra6g0550 353 PANTHER B3 DOMAIN-CONTAINING 34 347 - -
Vra6g0550 353 SUPERFAMILY DNA-binding pseudobarrel domain 39 134 IPR015300 -
Vra6g0550 353 SMART B3_2 41 135 IPR003340 GO:0003677
Vra6g0550 353 CDD B3_DNA 40 132 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0550 Vra-Chr6 4782937 4784893 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0550 41 348 REM Transcription Factor Family AT3G53310 28.296 3.69e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vra6g0550 B3 2.4e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0550 - - gmx:100810634 367.081