Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0542 ATGAAGATTGCATCTCACTCCGACATCACTGAAGCAGTCCAGCCTCTCCTGTCGCCGGAATGCGAGCACTCGGCGGAGGATCGGGGTGCGCCGAATGGGTCAATCAGCGGAGCGGTGTTCAACATATCGACGACCATGATCGGTGCCGGAATCATGTCGGTTCCGGCGACGATGAAGGTGCTCGGCATAGTTCCGGGGTTCCTGGTGATCCTGTTGGTGGCACTTGTAACGGATGTGACCGTGGAATTTATGCTGAGGTACACGAGTTCCGGAAAATCCACTACTTACGCGGGCATGATGGGTGAATCGTTTGGGTCCGTTGGATCCCTCGCCGTTAAGATTTGCGTTCTCATAACCAATTTCGGAATCCTCATTATATATCTCATTATTCTAGGAGATATGCTGTGTGGAAATGAGTCCAACGGAACTACACACTTGGGTGTTCTACAAGAATGGTTTGGCATTAATTGGTGGACCTCTCGTGCTTTTACTCTTCTTATTGTTGCTCTTTTCATAATGCTTCCACTCGTTATGTTACGTCGTGTTGATTCACTGAGGTATACTTCTGCAATATCAATCCTACTGGCATTGGTCTTTCTTGCAATATGCTCATCAATGGCGATTAGTGCATTGTTGTCCGGCAAAACTCAATCACTAAGGATGGTGCCTGATTTCTCTCTAGTCACTGTCCTTGATCTTTTCACCACCATCCCTGTCTTTGTCACTGGTTTCGGATTCCATGTCAATGTTCATCCAATTAGAGCAGAGATTGGAAAAGTTACACACATGGGCAAGGCTGTGAAGATTTCCTTAGTAATATGCGTGGTTGTTTACTTTGCCATTGGCTTCTTTGCATACCTATTATTTGGAGACTCCATCATGCCCGATGTGTTAGTAAACTTTGATCAAAACTCCAATACCCATGTTGGTCGATTGCTGAATGATATTGTTAGAATAAGCTATGCACTCCATCTTGCACTTGTCTTCCCCATCATGAACTATTCCTTGAGGATCAACATAGATGAACTTATTTTCTCAAACAAAAATAAACCTCCTTTGGCTTCAGACACTCCAAGATTTGTGTCACTCACTTTGTCTTTGCTAGCTCTCACATACTTGGTGGCTGTGGCCATCCCAAACATTTGGTATTTCTTTCAGTTCTTGGGATCCACAACCGTTGTTTGCACCTCATTCATCTTTCCTGCTGCAATAGTTCTAAGGGACATGCATGGCATATCAAAGACAAAAGATCGAGTCATTGCAATTTCGGTCATTGTTTTTGCTGTTGGGACAAGCGGAATTGCTATATGGACCAACTTGAATCCAGAAGATGGTTAA 1338 0.4439 MKIASHSDITEAVQPLLSPECEHSAEDRGAPNGSISGAVFNISTTMIGAGIMSVPATMKVLGIVPGFLVILLVALVTDVTVEFMLRYTSSGKSTTYAGMMGESFGSVGSLAVKICVLITNFGILIIYLIILGDMLCGNESNGTTHLGVLQEWFGINWWTSRAFTLLIVALFIMLPLVMLRRVDSLRYTSAISILLALVFLAICSSMAISALLSGKTQSLRMVPDFSLVTVLDLFTTIPVFVTGFGFHVNVHPIRAEIGKVTHMGKAVKISLVICVVVYFAIGFFAYLLFGDSIMPDVLVNFDQNSNTHVGRLLNDIVRISYALHLALVFPIMNYSLRINIDELIFSNKNKPPLASDTPRFVSLTLSLLALTYLVAVAIPNIWYFFQFLGSTTVVCTSFIFPAAIVLRDMHGISKTKDRVIAISVIVFAVGTSGIAIWTNLNPEDG* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0542 445 Pfam Transmembrane amino acid transporter protein 33 434 IPR013057 -
Vra6g0542 445 PANTHER AMINO ACID TRANSPORTER, TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN-RELATED 12 442 - -
Vra6g0542 445 PANTHER AMINO ACID TRANSPORTER 12 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0542 Vra-Chr6 4723962 4727009 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0542 9 440 Amino Acid or Auxin Permease AAAP Family AT3G56200 52.995 4.80e-156 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0542 - - gmx:100794031 698.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0542 6 4723962 4727009 Vra6g0542 6 4723962 4727009 ECH
Vra2g1530 2 23238594 23241139 Vra6g0542 6 4723962 4727009 PCT