Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0541 ATGTCGCCGGTGGCCGGAGCTCGTGTCCCTCTCCTCCCTGACTCTGAGGGTGGTGTTCCTCCGGCAACAGTTTCTGGTGCTGTGTTCAATGTTGCCAACAGCATAATCGGCGCTGGCATAATGTCTCTTCCGGCAACCTTGAAGGTTCTTGGTGTGATTCCAGCTTTGGTGTTGATTCTTGTGATTGCCTTTCTGGCGGAACTTTCTGTAGACTTCCTGATGAGGTTCACGCGTGCTGGCCACACAACAACATATGCTGGTGTGATGAGAGAGGCGTTTGGACCAGTGGGAGCTCTAGCAGCTCAGATAGCTGTTGGATTTACTAATATGGGGTGTTTAATTATGTACCTTATTATTGCTGCGGATGTGTTTTCTGGTAGTAATCGCCAAGGGGAAGTACACTTGGGTGTGTTGCAACAATGGTTTGGAGTTCACTGGTGGAATTCAAGGGAATTTGCTTTGTTAGTGATCTTGCTCTTAGTTTTGCTTCCATTGGTCTTGTACCGTCGTGTAGAGTCGTTGAAGTTCAGCTCTGCAATATCAACTTTTCTTGCTGTGGCCTTTGTTACAACTTGTACTGTGTTGGCCATAATTGCTATTGTAGAAGGAAGAACACAGTCTCCTAAATTGATTCCTCGTTTGGACGAACATACCACTTTCTTTGACCTGTTTACTGCAGTTCCAGTGATTGTCACAGCTTACACATTTCATTTTAATGTACATCCAATTGGATTTGAACTTGCCAATGCATCAGATATGACAACAGCAGTCCGATTAGCATTACTGCTTTGTGCAGCTATTTACTTTTTTATAGGACTATTTGGGTATCTCTTGTTTGGAGATTCCACACAATCTGATATTCTGGTAAATTTTGACCAGAATACTGGATCTGCAATTGGTTCCTTGCTCAATGTTTTAGTTAGATTAAGCTATGGATTGCATGTTATACTCACTTTTCCAGTTTTGAACTTTTCCCTGAGAACCAACATAGATGAATTCTTCTTTCCCAAGAAGCCTCTATTAGCCACAGACTCTAAGAGATTTGTGAGTCTCACTGTAGTGTTACTAGTCTTGAGCTACCTTGCTGCTGTAGTAGTCCCAGATATTTGGTACATCTTTCAGTTTGTGGGATCAACATCTACTGTGTGTCTTTCCTTTGTCTTTCCTGGTGCTATTGTTCTAAGGGATTTATACGGTATAGCAACTAGAAGAGACAAAATCATTGCACTGTTTATGGTCATACTAGCTGCAATAACAAGTGTGATTGCAATCTCCACCAACATATACAAAGCTTTTCAGTAG 1302 0.4224 MSPVAGARVPLLPDSEGGVPPATVSGAVFNVANSIIGAGIMSLPATLKVLGVIPALVLILVIAFLAELSVDFLMRFTRAGHTTTYAGVMREAFGPVGALAAQIAVGFTNMGCLIMYLIIAADVFSGSNRQGEVHLGVLQQWFGVHWWNSREFALLVILLLVLLPLVLYRRVESLKFSSAISTFLAVAFVTTCTVLAIIAIVEGRTQSPKLIPRLDEHTTFFDLFTAVPVIVTAYTFHFNVHPIGFELANASDMTTAVRLALLLCAAIYFFIGLFGYLLFGDSTQSDILVNFDQNTGSAIGSLLNVLVRLSYGLHVILTFPVLNFSLRTNIDEFFFPKKPLLATDSKRFVSLTVVLLVLSYLAAVVVPDIWYIFQFVGSTSTVCLSFVFPGAIVLRDLYGIATRRDKIIALFMVILAAITSVIAISTNIYKAFQ* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0541 433 Pfam Transmembrane amino acid transporter protein 22 417 IPR013057 -
Vra6g0541 433 PANTHER AMINO ACID TRANSPORTER, TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN-RELATED 3 432 - -
Vra6g0541 433 PANTHER AMINO ACID TRANSPORTER 3 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0541 Vra-Chr6 4720425 4722938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0541 8 430 Amino Acid or Auxin Permease AAAP Family AT3G56200 57.981 5.11e-173 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0541 - - gmx:100800330 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0541 6 4720425 4722938 Vra2g1530 2 23238594 23241139 PCT