Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0505 ATGTCTCCCTCAAATTTGTCAAGGCCACCAGAAGCAGTTTTGAATATTATGAATGAAAACTGGCAAACAAGAGGTAAAACTGCTAATGCTCTCAGGTTTTTCCTAATAGTTTTGGCAGTCTGCTCAAGCATGAGTGTGGCTCATATGTACCTGATTTTCAGCATTGGTGGTATGAGAATTAGGATGTCGCTGGCTATTATTCTGTGTGAAGCTAATATTGTACTGAGTAATTGGCAAAGGAAGGCTCATGGAGATGATGATATGCTGGTAAAGGGGAAAGTGCAGGATGTGCTGTTAGATTACTTGCATTCGAGCCGGGGATACAGCTTCTTGGATGCTGAGTTCATTAGCAAAAATTCACCATCTTTTGTTCAAGGTTTGGTGTCAGAGTTTCGTGGACAAGATGATGATGTTGCCACTTGTTTGAGGAAGTGGCTGTGGTACAACCCCATTAATGAGTTTGAACCATTCTTTGAGAGTTTGGGGATTAGTCCTCGTGAGTTGCCTTCGTTTCTCCCGCGTGGTATGATGTATTTGTCTGATGATCATGTTATGCTTGCCAATTTCCACGTTTTGAGTAATTATGGAGTCCCAAGGAATAGGGTAGGGAAGATTTATCGAGAGGCAAAGGAGCTTTTCGGGTATCCTAATGGACTGTTGTTGTCGAAATTTCGAGGTTATGAAAGGTTAGGTTTGAGTAGATCCATGGTCATCAAGCTTGTTGTTTGTTGCCCTTCACTTTTGGTTGGTGAAACAAGTGTTGAATTGGCCATGGTTCTGGATTGGTTGAAGAAAATTGGTATTGGACATGATTGGATTGGGAATTACATGTCTTGTTTGAAAACATATGACCCAAGAAGAATGCTTGATGCTATACAATTTGTTCATAAAGTTGGTTATTCGGAAGAACAGATGCACAATTTCTTCAAGGAAAACCCTGCGTTATTACTGGAAGGTCTTGAGAAGAAGGTGTATGTATTTTTGGGTGTAGCATTTAAGTTAGATCTCAATAGGAATGTGATTTATTCTTGTTTTGTAGAATATCCTCATATCTTGACTAAGAAGTGTGCAAAAAATCTTTTGGGAGTGATTGGTTTTTTGCATTATGTTGGAATGGATATAGATGACATTTCGCGTATTTTGTCTAACCACATGCATCTCCTGAGCTCACATCCCTTCAAAGGCCCTAAAGCTGTTTGTTCGCAGTTAAAACTTAGAAAAGCTGATCTATGCCAAATCATAAAGGATGATCCACTGAAGCTAGTTAGTTTGGCTTCAAAACTGAAACAGAATTCTAATTTACAGTTATTGCGTGATGACACAAGTAAACATTTGGGGAAAAAAGCATTCTTGCTGAAGTTGGGATATGCTGAGAACTCTGAGGATATGGCAAAAGCAATAAAAAGATTCCGAGGGAGAGGTGATCAATTACAGGAGAGGTTTGATTGCCTTGTTGAAGCTGGTTTGGACTATAACATTGCACTCAAAATGATAAAATGTGCTCCTATGATTCTAAACCAGAACAAAGTTGTGATTCAAAAGAAGATTGATTTCTTAAGAAACATTTTAGGTTACCCATTGGATTGCGTCNTGACATTTCCAGCATACTTGTGTTATGACTTAGAAAGAATCATGCTCAGATTTTCAATGTATGCTTGGGTGGCAGAAAGGAAAGCAGCAAAACCTATGATGGCCTTGAGCACTATCCTCGCATCCTCTGATGAAAAATTTGTAAAATACATTGTGAATGCACATCCTGAAGGCCCAATCATCTGGGATGGTCTAAAGAAGTTATTGCTAAAAGATAAGAGCCAGCTCTTCCCTTAA 1827 0.3908 MSPSNLSRPPEAVLNIMNENWQTRGKTANALRFFLIVLAVCSSMSVAHMYLIFSIGGMRIRMSLAIILCEANIVLSNWQRKAHGDDDMLVKGKVQDVLLDYLHSSRGYSFLDAEFISKNSPSFVQGLVSEFRGQDDDVATCLRKWLWYNPINEFEPFFESLGISPRELPSFLPRGMMYLSDDHVMLANFHVLSNYGVPRNRVGKIYREAKELFGYPNGLLLSKFRGYERLGLSRSMVIKLVVCCPSLLVGETSVELAMVLDWLKKIGIGHDWIGNYMSCLKTYDPRRMLDAIQFVHKVGYSEEQMHNFFKENPALLLEGLEKKVYVFLGVAFKLDLNRNVIYSCFVEYPHILTKKCAKNLLGVIGFLHYVGMDIDDISRILSNHMHLLSSHPFKGPKAVCSQLKLRKADLCQIIKDDPLKLVSLASKLKQNSNLQLLRDDTSKHLGKKAFLLKLGYAENSEDMAKAIKRFRGRGDQLQERFDCLVEAGLDYNIALKMIKCAPMILNQNKVVIQKKIDFLRNILGYPLDCVXTFPAYLCYDLERIMLRFSMYAWVAERKAAKPMMALSTILASSDEKFVKYIVNAHPEGPIIWDGLKKLLLKDKSQLFP* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0505 608 Pfam mTERF 476 577 IPR003690 GO:0003690|GO:0006355
Vra6g0505 608 Pfam mTERF 292 431 IPR003690 GO:0003690|GO:0006355
Vra6g0505 608 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 88 596 - -
Vra6g0505 608 PANTHER CGI-12 PROTEIN-RELATED 88 596 IPR003690 GO:0003690|GO:0006355
Vra6g0505 608 SMART mt_12 203 233 IPR003690 GO:0003690|GO:0006355
Vra6g0505 608 SMART mt_12 238 269 IPR003690 GO:0003690|GO:0006355
Vra6g0505 608 SMART mt_12 495 526 IPR003690 GO:0003690|GO:0006355
Vra6g0505 608 SMART mt_12 527 558 IPR003690 GO:0003690|GO:0006355
Vra6g0505 608 SMART mt_12 342 373 IPR003690 GO:0003690|GO:0006355
Vra6g0505 608 Gene3D Transcription termination factor 3, mitochondrial 147 326 IPR038538 -
Vra6g0505 608 Gene3D Transcription termination factor 3, mitochondrial 327 588 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0505 Vra-Chr6 4331928 4335289 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vra6g0505 mTERF 7.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0505 - - lang:109340661 644.81