Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0504 ATGATTTCCCTGCTGATTTCAAATGGCTTCTTTCTTTCCCACCGGGCCATGCCTCCAAAACCCCTTCCACGAAAAACCCCATTTTTCATTTCCCTCAAAGTTCGATGCTTTCGTACTTCAGAGTCAAACCCAGTTCCCGATTTTCCTCCACCGAGTTCCGTTCTCTTGCCACGTTCACGTTCCATCAAACGGGTCTCTCGCCTCTTGAGGACTGAACTTCAACGCGCTCTAATGGATTACCTGCATTTCACGCGCGGCTACACCTTCTCCGACGCGGAGTACATCAGCAAGAACTCGCCTCGTTTTGTAGAATCATTGGTGCCAATGATTGACGACAAAGATGACGTTCCCCGATCGTTACGGAAGTTCTTCAGGTACAACCCCATCAACGAGTTTGAACCGTTTCTCGAGAGTTTGGGAATTGGCCTTTCCGAGTTGCATTTGTTTCTCCCCCACGGCATGATTTTCTTGGCTGACGATCACGTGTTGCTTCATAATTTCCATGTTTTGTGTAACTATGGGGTGCCAAGGAATAGAATGGGGAGGTTCTATAAAGAGGCAAAAGAAATTTTTGGGTATGCCGGTGGGTTGTTGGAGTCAAAGTTGCAAGGCTATGAGAATTTGGGTTTGAGTAGATCAACTGTTGTGAAGCTTGTTGTTTGCTGTCCTTTGCTTTTGGTTGGTGATGTCAATTATGAATTAGTTGCTGTGCTTGAGTGGATGAAGAGAATAGGGATTGAAAGTGATTTGATGGTCAATTACTTGTCTTGTTCTAGGACATATAGTTGGAAAAGAATGCTTAGTACATTGCAGTTTCTTCATAAAGTGGGTTATTCTGAGGAACGGATCCACAATTTGTTTAGGGGAAATCCGAAACTGTTTTTGGAAGGTATTGGGAAGAAGGTGTACTTATTTTTTGGTCGATTGGTTAAAATTGGTGTGGAGATAAATGTGATTTATTCTTATTTTGTGGAGTATCCCAATATCTTGTCATATAAGTGTGCTAAAAATATGTTGAAAGTGATTGGCTTTTTGTGTGCTATTGGAATGGGAAAAGATGACATTTCTCACATTTTCTCTAAGCACGTGCATCTCCTGAGTACATGCTCCTTGAAAGGTCATAAAACTGTCTGTCAGGAGTTAAAAGTTGGAAAAGCTGATTTGTATCAAATCATAAAGGATGATCCATTGAAGCTAATTAGTTTTTCATCAAAGCAGCAACAGAAGAGCGATGGAAAGGTAGATAGTCATGACCCACGAAACTATTTGGAAAAAAGAACTTTCTTGCTGAAATTGGGATATACTGAAAACTCTGAAGAGATGGCAAGAGCATTAAGAATGTTCAGAGGTAGAGGTGATCAATTACAAGAAAGGTTTGATTGCCTGGTAGAAGCTGGTTTGGACTATAATAGTGTGATCGAAATGATAAAACGAGCTCCTATGATTCTAAGTCAGAACAAAACTGTAATCAAAAGGAAGATTGATTTCTTAAAAAATGTTTTAGATTACCCACTAGAATGTCTCGTGGGATTCCCAACATACTTTTGCCATGATTTGGACAAAATTGTTGAAAGACTTTCAATGTATGCATGGCTGAAGGGGAGGAATGCCATAAATCCCACGTTAACCTTGAGTACCATAGTTGCATCCAATGATAAACGCTTTGAAAAGTACTTTGTGAACGTTCATCCTCAAGGTCCAGCCGTCTGGAAGGGTTTAAAAAGGTCATCTAAAAAAGATAAGAACTAA 1749 0.4042 MISLLISNGFFLSHRAMPPKPLPRKTPFFISLKVRCFRTSESNPVPDFPPPSSVLLPRSRSIKRVSRLLRTELQRALMDYLHFTRGYTFSDAEYISKNSPRFVESLVPMIDDKDDVPRSLRKFFRYNPINEFEPFLESLGIGLSELHLFLPHGMIFLADDHVLLHNFHVLCNYGVPRNRMGRFYKEAKEIFGYAGGLLESKLQGYENLGLSRSTVVKLVVCCPLLLVGDVNYELVAVLEWMKRIGIESDLMVNYLSCSRTYSWKRMLSTLQFLHKVGYSEERIHNLFRGNPKLFLEGIGKKVYLFFGRLVKIGVEINVIYSYFVEYPNILSYKCAKNMLKVIGFLCAIGMGKDDISHIFSKHVHLLSTCSLKGHKTVCQELKVGKADLYQIIKDDPLKLISFSSKQQQKSDGKVDSHDPRNYLEKRTFLLKLGYTENSEEMARALRMFRGRGDQLQERFDCLVEAGLDYNSVIEMIKRAPMILSQNKTVIKRKIDFLKNVLDYPLECLVGFPTYFCHDLDKIVERLSMYAWLKGRNAINPTLTLSTIVASNDKRFEKYFVNVHPQGPAVWKGLKRSSKKDKN* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0504 582 Gene3D Transcription termination factor 3, mitochondrial 301 571 IPR038538 -
Vra6g0504 582 Gene3D Transcription termination factor 3, mitochondrial 114 249 IPR038538 -
Vra6g0504 582 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 49 574 - -
Vra6g0504 582 SMART mt_12 505 536 IPR003690 GO:0003690|GO:0006355
Vra6g0504 582 SMART mt_12 473 504 IPR003690 GO:0003690|GO:0006355
Vra6g0504 582 SMART mt_12 321 351 IPR003690 GO:0003690|GO:0006355
Vra6g0504 582 SMART mt_12 181 211 IPR003690 GO:0003690|GO:0006355
Vra6g0504 582 SMART mt_12 216 247 IPR003690 GO:0003690|GO:0006355
Vra6g0504 582 SMART mt_12 438 468 IPR003690 GO:0003690|GO:0006355
Vra6g0504 582 Pfam mTERF 248 366 IPR003690 GO:0003690|GO:0006355
Vra6g0504 582 Pfam mTERF 442 556 IPR003690 GO:0003690|GO:0006355
Vra6g0504 582 Pfam mTERF 270 486 IPR003690 GO:0003690|GO:0006355
Vra6g0504 582 PANTHER CGI-12 PROTEIN-RELATED 49 574 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0504 Vra-Chr6 4328350 4332615 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vra6g0504 mTERF 1.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0504 - - gmx:100803162 950.273