Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0499 ATGGAAAACTCAGACCACGACGAACCCGAGAAGAAGAGGCCTCATCTCACCTCTGTTTCTTCTCGCACATCTAGAAACTCCATCAACTCTCCTACCACCAACAAAACTGCTGATGCAGGAGTCTTACAGTTCCAGAATCAGCAGCTTGTTCAACAGATCGACGTCCAGAAACATGCTTTGCATGGCCTTGAAGAAAAAATTAGAGAATTAAAAGGAAAGCAAAGTTCTTATGATGACTTGTTAATTGCTCTCAACCAACTCTGGACTCAGTTGGTTGACGATATGATTCTTCTTGGTATACAAGCCGGGAGAGGCAAAGGCAAAGACACGTTGCGATATTTGACCGACATTGAAAATCCTGAAGGTTCACTTCCTTTGTGTCCTGCTGAGGATATATTTCTATGTAGATTAATCCAGAAAGATTCCATTAAAGGAATCAGTGATGATGAGATCACTGGTTATGTTGAGGAGGCCCTTGCTTTGCGTCAATCATCTACAATGGAGTTGTTGAAACTCCTGAAAGATATTATTGATGATCAGATGGAAAGATCAGGTGGTATAGCTCAGATTTTGGACGGAGATATATCTTCAGAAGATGCTATAACCCTAATGACTAAGATTGATGATATGATGAAAGAGGAGGCAAGTAATTTGCAAGAAGTGATTGATACTCTCCATGCAAAGCATAAAGAGTATACTGTTGGTATTAAAAAATTTATCAATGAGTGCTTACAAGAACAATCTGATATTAAACACCTAGCAGGTGAGCTTGATGAGATTGTGGCTGAACTTGAAGAGAGTAGAAGAAAACTAGTCAATCTGGAAATGCAAAAGGACACGTCAGTGGGGATGAATTCTCCCAATGCAGATGCAGTGAATGGAAATCTGTCTCCTGAAAACATTGCGGACAGGACCATGGGTTTGCGTGAGTTGAAGGATTCAATTGAAGAAGCAAAGATTGTGGATGCTGATCGTATCTCCGAGCTCCAAGAGGCACAGGAAGACAATCAGACCTTGACAAAGCAATTCCAAGATCTTCAGAATGAACTGAAAGATGATAAGTACATACGCAGTTCACGAATATACTCTTTAGCTAATGATCAACTTCAACATTGGACATCTGAATTGGCCCGGTATAAAACATTGGTAGAATCTCTGCAGGCTGGCAGTGTTCATATTGCAAAATGGGAGAATGAACTAAATTTGAAATTGGAGTCTGCTGATTCTGCAAGGCAGCTCCTTGACAATTCTGATCATAGGATTGATGACCTAGAGCACCAGTTGCAGAAGTGTATTATTGAAAAGAATGATCTTGAAATTAAAATGGAAGAAGCTAAACAGGATGCTGGGAGAAAAGATATCAAATCTGAGTTTCGTGTCATGGCTTCAGCTTTATCTAAAGAAATGGGAATGATGGAAGCTCAATTAAAGCGATGGAAAGATGCAGCTCACGAGGCTGTATCATTACGGGAGAAAGCACATTCACTAAGAGAAGTATTGAACGTGAAGACAAGTGAACTAAAGAGCCTTGCAAACAAATGTGCTGAACAGGTTTTGGAAATCAGGTCTTTAAAAATGCTGACTGAAAAGTTACAGAAAGAGAATCAGGAGTTAGAATTTGTTTTGGATATGTATGGCCAGGAGAATTATGATAAAAGTTATTCAGAAGTTAGAGAATCTGAAAGTAAGGCTCACTCTCAAGCTGAAATACTAAAAAATGCTTTGGATGAGCATAGCCTAGAGTTGAGAGTAAAAGCTGCCAATGAAGCTGAAGCTGCTTGTGAACAAAGGCTTTCTGCAGCTGAAGCTGAAATAGAGGACTTGAGGGCCAAGCTGGATGCGTCTGAGAGGGGTATTTTGGAGCTAACTGAGGCTATTAAAGTTAAAGAAGCTGAGGCAGAGGCATATATATCTGAAATTGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAGAACCAAAATCTGTTGGACCAGGTGATTGAGAGGGATGACTATAATATTAAGCTTGTATCAGATAGCGTGAAGGCAAAACAAGCATACAACACTCTATTGACCCAGAAGCAGGCCTTAGCTAAACAACTTCAACAACTGAATACTTCAATAGAAAATTCAAAAGCGAGGATTGCACATAGTGAAGAACAGATGAAAACCATTCTATCTGAAGCCATTAAGTGTAATCAAGAAGAAAAACACCTTGCAGTCACCCTGGAATTTGCAAGGTGGGAATTGGCAGATGCCGAGAAGGAATTGAAGCTGCTCAAGTCTTCTGTTTCCTCTTCAGAGAAAGAGTACGATCAAATCCAGAAAGACACGGAAGCTATTGAAATGGAATTGGAGAGTGAAAGGAGTTCAAGGAAGAAGCTAGAGGAAGAATTAAGGGAATTGAACAGCCAAATTGCTGAGCTGACTTCTGAAACTGGAGAAACCACAATACAAAAACTTGAAAAAGAAATAAGGATATGCAAGAACATGATCAAGTGTACTGTCTGCACTGATCGTCCTAAGGAGGTTGTGATTGTCAAATGCTATCATTTGTTCTGCAATCCATGCATTCAGAGAAATCTAGAGCTCCGGCACCGCAAATGTCCTGCATGTGGAACAGCATTTGGACAGAGTGATGTTCGTTTTGTAAAGATATGA 2646 0.4006 MENSDHDEPEKKRPHLTSVSSRTSRNSINSPTTNKTADAGVLQFQNQQLVQQIDVQKHALHGLEEKIRELKGKQSSYDDLLIALNQLWTQLVDDMILLGIQAGRGKGKDTLRYLTDIENPEGSLPLCPAEDIFLCRLIQKDSIKGISDDEITGYVEEALALRQSSTMELLKLLKDIIDDQMERSGGIAQILDGDISSEDAITLMTKIDDMMKEEASNLQEVIDTLHAKHKEYTVGIKKFINECLQEQSDIKHLAGELDEIVAELEESRRKLVNLEMQKDTSVGMNSPNADAVNGNLSPENIADRTMGLRELKDSIEEAKIVDADRISELQEAQEDNQTLTKQFQDLQNELKDDKYIRSSRIYSLANDQLQHWTSELARYKTLVESLQAGSVHIAKWENELNLKLESADSARQLLDNSDHRIDDLEHQLQKCIIEKNDLEIKMEEAKQDAGRKDIKSEFRVMASALSKEMGMMEAQLKRWKDAAHEAVSLREKAHSLREVLNVKTSELKSLANKCAEQVLEIRSLKMLTEKLQKENQELEFVLDMYGQENYDKSYSEVRESESKAHSQAEILKNALDEHSLELRVKAANEAEAACEQRLSAAEAEIEDLRAKLDASERGILELTEAIKVKEAEAEAYISEIETIGQAYEDMQTQNQNLLDQVIERDDYNIKLVSDSVKAKQAYNTLLTQKQALAKQLQQLNTSIENSKARIAHSEEQMKTILSEAIKCNQEEKHLAVTLEFARWELADAEKELKLLKSSVSSSEKEYDQIQKDTEAIEMELESERSSRKKLEEELRELNSQIAELTSETGETTIQKLEKEIRICKNMIKCTVCTDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI* 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0499 881 MobiDBLite consensus disorder prediction 1 35 - -
Vra6g0499 881 SUPERFAMILY RING/U-box 828 872 - -
Vra6g0499 881 Pfam Zinc finger, C3HC4 type (RING finger) 828 870 - -
Vra6g0499 881 Coils Coil 524 544 - -
Vra6g0499 881 PANTHER RING FINGER PROTEIN-RELATED 11 881 IPR013956 GO:0004842|GO:0010390
Vra6g0499 881 CDD RING-HC_BRE1_like 827 868 - -
Vra6g0499 881 ProSitePatterns Zinc finger RING-type signature. 844 853 IPR017907 -
Vra6g0499 881 ProSiteProfiles Zinc finger RING-type profile. 829 867 IPR001841 -
Vra6g0499 881 Coils Coil 584 660 - -
Vra6g0499 881 MobiDBLite consensus disorder prediction 19 35 - -
Vra6g0499 881 Coils Coil 682 723 - -
Vra6g0499 881 Coils Coil 250 277 - -
Vra6g0499 881 SMART ring_2 829 867 IPR001841 -
Vra6g0499 881 Coils Coil 407 455 - -
Vra6g0499 881 Coils Coil 738 807 - -
Vra6g0499 881 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1 11 881 - -
Vra6g0499 881 Coils Coil 329 349 - -
Vra6g0499 881 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 810 880 IPR013083 -
Vra6g0499 881 SUPERFAMILY Tropomyosin 682 829 - -
Vra6g0499 881 Coils Coil 46 73 - -
Vra6g0499 881 MobiDBLite consensus disorder prediction 1 17 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0499 Vra-Chr6 4290948 4301062 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0499 802 876 RAD5 or RAD16-like Gene Family AT5G05130 26.190 3.75e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0499 K10696 - gmx:100796610 1467.6