Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0498 ATGCGACGAGGGAGAGCCACCGCCGCTGTCGCCGCCGTCCATCCCTTGGCGGACCAGGAACCTCCCACCAAGGAGACGCGCTTCCGTGGCGTCAGGAAGCGCCCCTGGGGGCGATTCGCAGCGGAGATTAGAGATCCATGGAAAAAACAGCGCGTGTGGCTCGGTACCTTCGATTCAGCCGAGGATGCAGCACGGGCATACGACGCTGCGGCCCGATCCTTCCGTGGGCCCAAGGCGAAGACCAATTTTCCTTTCCCGAACCCCGACACGGACCACTCGCACTCGCAGATTCCGCTCTACCAGGCTCATGGGCTCTCCAAGTTCGATCAGGTCCAGGTGAACCGGCCCACCACCAGCGGCATGAGCAGCACGGTCGAGTCCTTCAGCGGGCCTAGGGTTCCTTCCTCCTCCACTCTCCACCCTCGCAAACCCGTAGTTAACCCTGTTGTCCCTCCTCTCGACGATTGCCATAGCGATTGTGACTCTTCTTCCTCCGTCGTTGAGGACGAGGACTGCGTCCTCACTTCCTCGTTCCGGCAACCGCTCCCCTTCGATCTCAACCTCCCGCCCCCCTGCGCCGACGATGACATCCCGGCCACCGCGCTCTGCCTCTGA 615 0.6293 MRRGRATAAVAAVHPLADQEPPTKETRFRGVRKRPWGRFAAEIRDPWKKQRVWLGTFDSAEDAARAYDAAARSFRGPKAKTNFPFPNPDTDHSHSQIPLYQAHGLSKFDQVQVNRPTTSGMSSTVESFSGPRVPSSSTLHPRKPVVNPVVPPLDDCHSDCDSSSSVVEDEDCVLTSSFRQPLPFDLNLPPPCADDDIPATALCL* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0498 204 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 22 183 - -
Vra6g0498 204 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Vra6g0498 204 MobiDBLite consensus disorder prediction 117 142 - -
Vra6g0498 204 CDD AP2 26 84 IPR001471 GO:0003700|GO:0006355
Vra6g0498 204 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 22 183 - -
Vra6g0498 204 Gene3D AP2/ERF domain 26 85 IPR036955 GO:0003700|GO:0006355
Vra6g0498 204 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Vra6g0498 204 SUPERFAMILY DNA-binding domain 27 85 IPR016177 GO:0003677
Vra6g0498 204 MobiDBLite consensus disorder prediction 117 146 - -
Vra6g0498 204 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Vra6g0498 204 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700|GO:0006355
Vra6g0498 204 Pfam AP2 domain 26 76 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0498 Vra-Chr6 4281892 4283051 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0498 1 204 AP2-EREBP Transcription Factor Family AT1G50640 49.123 5.51e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra6g0498 AP2 1.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0498 K09286 - gmx:100795557 260.766