Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra6g0497 | ATGCCAGAAAACAGGCAGGTTCTCAGGAATGCTGATTCTACACCTTCTGGTGACAACATTGAAGGTGGTGCAGATTTTTCTGAAGCGATTCGTCGTTTGAAAATCAATGATAATTGGGACAGAGATGCTGCAGCTCAATCTACCCAATATCCAGATCGACCCGGTGAACCCGATTGCTTGTATTATTTGAGGACTGGAATGTGTGGTTATGGGAGTAATTGTCGCTACCATCACCCTGCCCATATTTCAATTGGTTCTCATTATGGTGAAGAACTCCCCCAGAGGACCGGGCAACCTGATTGTGAGTATTTTCTTAAGACAGGGACATGCAAATATGGATCAACATGTAAATACCATCATCCAAAGGACAGGCGTGGTGCTGCTCCTGTGTCATTCAATACTTTAGGTCTTCCAATGCGTCAGGAAGAAAAATCATGTCCCTATTACATGAGAACCGGGTCTTGTAAGTTTGGTGTTGCATGCAAGTTTCATCATCCACAGCATGCTTCCATTGGAGCATATCCCTTGGCTGGATCTCCTACCTCAACAATTATCCCTACATCAGGTTTACCATATGCCGGAGGGTTTCCTGCATGGTCAGCAGTACCAAGAATGTCATATTTATCTGGGCAAGGTGTTCAATCTTATGTGCCACCTTTTCTCTCTTCTTCACAAGGCATTATACCCGTGCAGAGCTGGAACAACTACATGGGAAGTATGAACCCAACAATGCCTACTGGTTATCTTGGATCTAATCTTGTTTATGACTTCATGAATCTGGGGGAGTCACTATTCGGCGGGCAGGCGATAAATTCAGCTCTCCCAAATCGACCTGATCAACCAGAATGTAGATACTTTATGAGCACTGGGACCTGCAAATATGGATCCGATTGCAAGTTCCACCATCCAAAGGAAAGAATATCTCAATCATTAATAAATCCACTTGGCCTTCCCGTGAGACCTGGGCAAGCTGTATGCTCTTACTACAGAATCTATGGAATGTGCAAATTTGGTCCAACATGCAAATTTGATCATCCAGTTTTGACTATCCCTCAGAACTATGGTTTGACCTCACCTGCTCTAGCACTTGATGCTCCTCTTATTACTAACCAAAGAGGGTTGTCAAGTGTACAACCACCTGAGACATCTCCTTCTAAATTATCAAGTGACAACAAGCTTCAGCACTCTGATGCAAAAGCTGCCACAGAAGATTCATCCAAACAAGCTGATACTACACCAAATTCCTTCCCAGCCTCCTCAGAGCCTTTACATGACTAA | 1278 | 0.439 | MPENRQVLRNADSTPSGDNIEGGADFSEAIRRLKINDNWDRDAAAQSTQYPDRPGEPDCLYYLRTGMCGYGSNCRYHHPAHISIGSHYGEELPQRTGQPDCEYFLKTGTCKYGSTCKYHHPKDRRGAAPVSFNTLGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPQHASIGAYPLAGSPTSTIIPTSGLPYAGGFPAWSAVPRMSYLSGQGVQSYVPPFLSSSQGIIPVQSWNNYMGSMNPTMPTGYLGSNLVYDFMNLGESLFGGQAINSALPNRPDQPECRYFMSTGTCKYGSDCKFHHPKERISQSLINPLGLPVRPGQAVCSYYRIYGMCKFGPTCKFDHPVLTIPQNYGLTSPALALDAPLITNQRGLSSVQPPETSPSKLSSDNKLQHSDAKAATEDSSKQADTTPNSFPASSEPLHD* | 426 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra6g0497 | 425 | MobiDBLite | consensus disorder prediction | 373 | 391 | - | - | |
Vra6g0497 | 425 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Vra6g0497 | 425 | SUPERFAMILY | CCCH zinc finger | 281 | 306 | IPR036855 | GO:0046872 | |
Vra6g0497 | 425 | ProSiteProfiles | Zinc finger C3H1-type profile. | 53 | 81 | IPR000571 | GO:0046872 | |
Vra6g0497 | 425 | MobiDBLite | consensus disorder prediction | 373 | 425 | - | - | |
Vra6g0497 | 425 | SUPERFAMILY | CCCH zinc finger | 139 | 168 | IPR036855 | GO:0046872 | |
Vra6g0497 | 425 | ProSiteProfiles | Zinc finger C3H1-type profile. | 140 | 168 | IPR000571 | GO:0046872 | |
Vra6g0497 | 425 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 97 | 122 | IPR000571 | GO:0046872 | |
Vra6g0497 | 425 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 279 | 304 | IPR000571 | GO:0046872 | |
Vra6g0497 | 425 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 55 | 79 | IPR000571 | GO:0046872 | |
Vra6g0497 | 425 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 144 | 167 | IPR000571 | GO:0046872 | |
Vra6g0497 | 425 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 322 | 346 | IPR000571 | GO:0046872 | |
Vra6g0497 | 425 | Gene3D | - | 271 | 349 | - | - | |
Vra6g0497 | 425 | ProSiteProfiles | Zinc finger C3H1-type profile. | 95 | 123 | IPR000571 | GO:0046872 | |
Vra6g0497 | 425 | ProSiteProfiles | Zinc finger C3H1-type profile. | 277 | 305 | IPR000571 | GO:0046872 | |
Vra6g0497 | 425 | ProSiteProfiles | Zinc finger C3H1-type profile. | 320 | 348 | IPR000571 | GO:0046872 | |
Vra6g0497 | 425 | SUPERFAMILY | CCCH zinc finger | 318 | 346 | IPR036855 | GO:0046872 | |
Vra6g0497 | 425 | MobiDBLite | consensus disorder prediction | 405 | 419 | - | - | |
Vra6g0497 | 425 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26 | 10 | 408 | - | - | |
Vra6g0497 | 425 | SUPERFAMILY | CCCH zinc finger | 99 | 124 | IPR036855 | GO:0046872 | |
Vra6g0497 | 425 | Gene3D | - | 91 | 174 | - | - | |
Vra6g0497 | 425 | SUPERFAMILY | CCCH zinc finger | 58 | 80 | IPR036855 | GO:0046872 | |
Vra6g0497 | 425 | Gene3D | - | 20 | 89 | - | - | |
Vra6g0497 | 425 | SMART | c3hfinal6 | 142 | 167 | IPR000571 | GO:0046872 | |
Vra6g0497 | 425 | SMART | c3hfinal6 | 53 | 80 | IPR000571 | GO:0046872 | |
Vra6g0497 | 425 | SMART | c3hfinal6 | 320 | 347 | IPR000571 | GO:0046872 | |
Vra6g0497 | 425 | SMART | c3hfinal6 | 277 | 304 | IPR000571 | GO:0046872 | |
Vra6g0497 | 425 | SMART | c3hfinal6 | 95 | 122 | IPR000571 | GO:0046872 | |
Vra6g0497 | 425 | PANTHER | PROTEIN PHOSPHATASE RELATED | 10 | 408 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra6g0497 | Vra-Chr6 | 4268728 | 4273145 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra6g0497 | 1 | 407 | C3H Transcription Factor Family | AT1G04990 | 48.068 | 2.32e-118 | 349 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Vra6g0497 | zf-CCCH | 4.2e-07 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra6g0497 | - | - | vra:106765262 | 905.59 |